KEGG   Spathaspora passalidarum: SPAPADRAFT_136337
Entry
SPAPADRAFT_136337 CDS       T03101                                 
Name
(RefSeq) RNA polymerase II fourth largest subunit
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03020  RNA polymerase
spaa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SPAPADRAFT_136337
  09124 Replication and repair
   03420 Nucleotide excision repair
    SPAPADRAFT_136337
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spaa03021]
    SPAPADRAFT_136337
   03400 DNA repair and recombination proteins [BR:spaa03400]
    SPAPADRAFT_136337
Transcription machinery [BR:spaa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     SPAPADRAFT_136337
DNA repair and recombination proteins [BR:spaa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      SPAPADRAFT_136337
SSDB
Motif
Pfam: RNA_pol_Rpb4 NESP55 FAM176 Aminotran_4 TMEM51 NPA GCV_T SID-1_RNA_chan
Other DBs
NCBI-GeneID: 18869958
NCBI-ProteinID: XP_007374564
JGI: 136337
UniProt: G3AL06
LinkDB
Position
Unknown
AA seq 203 aa
MNVSTSALGVRRRKAKAASQNIDDEENAAILKLGPEFQLTQITNSGEEEQLIALNLSEAR
LLIRAALKERKNKNKGKQQQAQQSASQSTQSPDQDEDDKEDEISNMELAGPNSNEIMHKT
LNYLSNFARFKNSSSTETVEKLLNDFSLSAIEPLHPFELAQLGTLECEDAEEAKSLIPSL
ANKVSDVQLQTLLTELRKYQTLS
NT seq 612 nt   +upstreamnt  +downstreamnt
atgaacgtgagtacaagtgcattaggagtaagaagaagaaaggccaaagccgctagtcaa
aatattgacgatgaagaaaatgctgccattttaaaattaggaccagaatttcaattaacc
caaataacaaattccggagaagaagaacaattaattgccttgaacttatcagaagcaaga
ttattgattagagcagcattgaaggaacgaaaaaataagaataaaggtaaacaacaacaa
gcacaacaactggccctgcaactgacccaactgccagatcaagacgaagatgataaggaa
gatgagatatccaatatggaattagctggtccaaactcaaatgaaattatgcataaaact
cttaactatttgtcaaactttgccagatttaagaattcttcttctacagaaaccgtagag
aagttattgaatgattttagcttgctggcaatagaaccattacatccatttgaattggcc
caattgggtaccttagaatgtgaagatgctgaagaagccaagtcattgataccaagttta
gcaaataaagtaagtgatgttcaattgcaaactttacttactgaattaagaaaatatcaa
acattaagttga

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