Spathaspora passalidarum: SPAPADRAFT_140212
Help
Entry
SPAPADRAFT_140212 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAPADRAFT_140212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
spaa03041
]
SPAPADRAFT_140212
03009 Ribosome biogenesis [BR:
spaa03009
]
SPAPADRAFT_140212
Enzymes [BR:
spaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPAPADRAFT_140212
Spliceosome [BR:
spaa03041
]
Complex A
U2 snRNP components
U2 related factors
SPAPADRAFT_140212
Complex B
SPAPADRAFT_140212
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
SPAPADRAFT_140212
Ribosome biogenesis [BR:
spaa03009
]
Eukaryotic type
90S particles
Helicases
SPAPADRAFT_140212
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
AAA_22
WHD_HA2
SRP54
AAA_19
Flavi_DEAD
Cas3-like_C_2
AAA_30
T2SSE
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
18870278
NCBI-ProteinID:
XP_007376057
JGI:
140212
UniProt:
G3ARF8
LinkDB
All DBs
Position
Unknown
AA seq
751 aa
AA seq
DB search
MSERKRQRRNSLAEQVAEAAELSLRLHPRPETPNELVHHDAGEFRDLIRHKTTAAQAEAL
ETGKVNPFTGEPFSQQYVKILEVRRDLPVHAQRDQFLETFHSSQIMVFVGETGSGKTTQI
PQFVLYDEMPHLTGMQVACTQPRRVAAMSVAARVADEMDVKLGEEVGYSIRFENRTSNKT
ILKYMTDGMLLREAMEDHNMSRYSCIILDEAHERTLATDILMGLLKQVSVRRPDLKIIIM
SATLDAEKFQKYFNNAPLLAVPGRTHPVEIYYTPEFQRDYVDAAIRTVLQIHATEETEGD
ILLFLTGEEEIEDACRKISLEGDELIREQNCGPLKVYPLYGSLPPHQQQRIFEPAPVNPN
PKGRPGRKVIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRVRVESLLVSPISKASAQQ
RAGRAGRTRPGKCFRLYTEEAFKKELIEQSYPEILRSNLASTVLELKKLGIDDLVHFDFM
DPPAPETMMRALEELNYLECLSDEGDLTALGRMASQFPLDPMLAVMLIGSPAFKCSEEIL
TIVAMLSVPNVFVRPASARKRADEAKMHFAHQDGDHLSLVNVYEAFISPHTAEIGAHQWC
RDNFLSYRSLQSAKNVRSQLKRIMEKHDLEIISVYEQVPEVEYWDNIRKALTAGFFMQVA
KKKSGTKGYLTVKDNQDVLIHPSTVLSKEGEWLIYNEFVLTSKNYVRTVTTVKADWLVEI
APKYYNLDHFAKGDVRLSLERIIDRVEKSRK
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaacgtaaacggcaaagacgaaattcattagctgagcaggttgcagaagctgcc
gagctttcactccgcctccaccctcgtccagaaacacccaacgagttggttcaccatgat
gctggagaattccgtgatcttatccgtcataaaaccaccgctgctcaagctgaagctctt
gaaaccggtaaggttaatccattcacgggcgaacctttcagtcaacaatatgtcaaaatt
ttagaagtaagacgagacttgcctgtacatgctcaaagagaccaatttttggagacattc
cattccagtcaaatcatggtttttgttggggaaactgggagtggtaaaaccacccaaatt
cctcagttcgtgttgtacgatgaaatgccacatttgaccggtatgcaagttgcatgtacc
caacctagaagggttgctgccatgagtgtggctgcaagagttgcagatgaaatggatgtc
aaattgggtgaagaagttggttattctatcagatttgaaaaccgtaccagtaacaagacc
atcttgaagtatatgaccgatggtatgctactcagagaagcaatggaagaccacaatatg
agcagatactcctgtattattttggatgaagcgcatgaaagaactttagctactgatata
ttgatgggtttacttaaacaagtcagtgtaagaagaccagatttaaagattattattatg
tctgctaccttggatgctgaaaagttccagaaatatttcaacaatgccccattattagcc
gtcccagggagaacccacccggttgagatttactatactccagaattccaacgtgattat
gttgatgctgccatccgtactgttcttcaaatccatgctacggaagaaactgaaggtgat
attcttcttttccttaccggtgaagaagaaattgaagatgcatgcaggaaaatctcgctt
gaaggtgatgagcttattcgtgaacaaaactgtggtccattgaaggtttatccactttac
ggttctttaccaccacaccaacaacaaagaatctttgaaccagccccagttaacccaaat
cctaagggccgtccaggacgtaaagtcattgtttctaccaacatcgccgaaacttcctta
accattgatggtatcgtatatgttgttgaccctggtttttccaaacaaaaggtttacaac
cctagggtacgtgtggaatcacttcttgtttcgccaatctccaaagccagtgcccaacaa
agagctggtcgtgccggtcgtactcgtccaggtaaatgtttcagattatacaccgaagaa
gctttcaagaaggaattaattgagcaatcctacccagaaatccttcgttctaatcttgca
tccaccgttcttgaattaaagaaacttggaatcgacgatttggttcattttgatttcatg
gatcccccagcaccagaaaccatgatgcgtgcccttgaagaacttaactatctcgaatgt
ctttccgacgaaggtgatctcactgccttgggtagaatggcttcccaattcccccttgat
cctatgcttgccgtgatgttaattggtagtcctgcattcaagtgttcagaagagattctt
accattgtcgccatgctttctgttcctaatgtgtttgtgagacccgccagtgctagaaag
agggccgacgaagccaaaatgcattttgctcatcaagatggggatcatttgtcgttggtt
aatgtttatgaagcattcatctccccacatactgccgaaattggagcccaccaatggtgc
agagataacttcttgagttaccgttcccttcaactggccaagaatgtcagaagtcaactt
aaacgtattatggaaaaacacgatttagaaataattagcgtttatgagcaagttccagag
gttgagtactgggataacatacgtaaggcattaaccgccggtttctttatgcaagtagcc
aagaagaagagtggtactaagggatatcttacagttaaggacaaccaagatgttttgata
cacccttcaactgtgttgagtaaagaaggggaatggttgatttataatgaatttgtgttg
actagtaagaattatgttagaaccgtcactaccgttaaagccgattggttagtggagatt
gcaccaaagtactataatttggatcattttgccaagggtgatgttagattgagtttggaa
agaattattgatagagtagaaaagagtagaaagtaa
DBGET
integrated database retrieval system
