Spathaspora passalidarum: SPAPADRAFT_142101
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Entry
SPAPADRAFT_142101 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAPADRAFT_142101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_142101
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
SPAPADRAFT_142101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_22
TPR_19
TPR_1
TPR_2
TPR_8
TPR_14
TPR_16
TPR_12
TPR_CcmH_CycH
TPR_9
TPR_17
ANAPC3
TPR_6
TPR_11
TPR_10
TPR_7
TPR_MalT
TPR_15
ARM_TT21_N
ARM_TT21_5th
RPN7
TPR_EMC2
ArgoL1
TPR_Slam
ARM_TT21_4th
Motif
Other DBs
NCBI-GeneID:
18870422
NCBI-ProteinID:
XP_007377030
JGI:
142101
UniProt:
G3ATN4
LinkDB
All DBs
Position
Unknown
AA seq
1404 aa
AA seq
DB search
MSSLKKLLKSAKLSIEQNDPESALEYADEAIEIDSNCYFAYLFKGKSYQLLRDVPQAIAQ
FKRATEIEPENLLAWKGYFQTVRASNDYSLFFDVLTKLVKLQRDQELPLAETLKDLRNYL
DSNKYKSNDVLYELYLKSIIPGTELGELVGSALGSGESNIQKLLDFKKTQLDKLVQTRIS
KERVKFGRNLTIDQKQALDAIAWEYYKDGQLSKLYESFLNISNDDELRQKYEEDFLKYRY
ELLKISPNKTELFNEIKQTLEDMILVNTKSLFCWNLYFDWCDTKTIFDLDEEKIIAYLRI
FQNEGLGLILFAFVMSGVSPYNKERIVKGISYNEDNQNKKNKKKKKEKVLEEEDASALGL
EENEEEQPEDFSQYYLPPDEILGYILEGYSKSKDSILANRIIVNYYIHLREYDMASERCR
DGIRLLADIQRTFGINLSNTKEDFLCSLAIVYTYYEAPKNFSRALQLYDKILESNTTNIK
AKVGKGLIFAEQGDLEQAKLILEEVLQEHPENSEAELEYNWCLINLGQFEQGKQGLEKFI
SKVTGTDLYSGEIRAKANWRLAKGYFMQDDTNKDNIKQSYTYLIQSLKDSESYAPSYTLL
GVLFHDYYGDLEKAQKCFFKAFDLDVNEIVAAKYLVEHATAKNEWDVAQVLAKRVVTNES
SRRLLLRPSDDKDNSWPYRVLGCGSLNVQDDAKAVEYFQNALRINSNDYECWVGLGEAYY
NCGRYDAAAKVFHHAIAMKEEAPWTVKYLLGVVTCEMKEFNEGLTYLYEALESQPNEECI
ITAIYEAQLENTHKYVHSGFFGRAADSSLKALEFIKASILSNSTSQKVWKSLGDSLQVFS
KVQSNIDKVPFDDLIAIFKHIEIDDIILSDITLDESISLAHAIELFNQDKKVQSLNIFII
LCAIAGVKYLPVKVNKALRSTALYNLGLALLQTYQNGENEKYRENSVTLFKKAIQLENHN
PSYWIGLGNAYFYNNPQISQHCYIKATTLEIRDGGIWINLAILFLKYGDLELSQQAFLRA
QSVAPQDSQSWLGQAIAFEILGDETKAFTYYTHAFTLSKGRLAVAQFLYGLSVINKRVGG
NFDPRDIETAQEFGISNQAMQQYLKYKPDDEDALSVALTIAERCKDFENAIKLGNKLCEI
LEKKYEETEQESVLENFSLIKSQVARIYLGLGDYESAMENAQMALQLIEGDDSHPEITLS
CHITIGLSYFFTNEFESSIQELKLILSQYNSSQRIVTLIAQILYAHGTEESKQASIDQLF
AHIEENGSSLLVVLTLGAISLVENYQEYLGAIKEELQGLDLTELVNDTYRDVPRLLTEIN
NRLGRGDDKSVWLKYAYLFPFDYNVWKHVSNEMAKAVITLQDVKVNGLQYSETLLKTGDL
RDIQRSLMLTPGNQEAIEALKNCF
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcattaaagaaattattaaagtctgctaagctttccatagaacagaatgatccg
gaatcagcattggagtatgcagacgaagccattgaaattgattccaattgttattttgct
tatttattcaagggaaaatcttaccaattgttacgagatgttcctcaggccatagctcaa
ttcaaacgagccactgagattgaaccagagaatctccttgcatggaagggatattttcaa
acagtcagagcatccaatgactacagcttgtttttcgacgttcttaccaaattagtgaaa
ttacaacgagatcaagaattgccactagctgaaactctaaaagacttgcgcaattattta
gactcaaacaagtacaagagcaacgatgtgttgtatgaattatatttaaaatctattata
ccgggtactgaacttggtgagttggttggatctgctttaggtagtggtgaatcaaatatt
caaaaattacttgattttaaaaagactcaacttgataaactagttcaaacaagaatactg
aaggaaagagtcaagtttggacgtaacttaactattgatcagaaacaagcattagatgca
attgcatgggaatattacaaggatggacagttgagcaagctttatgagtcattcctcaac
atttctaatgatgatgaattgagacagaaatatgaagaagatttcttgaaatatagatat
gaattgttaaagatatcccccaataagacagaattattcaatgaaatcaaacaaactctc
gaggatatgattcttgtaaatacaaagagtttattttgttggaatttatactttgattgg
tgtgataccaagaccattttcgatttagatgaagaaaaaattattgcatatttaagaatt
tttcaaaatgaagggttaggtttgattttatttgcatttgtaatgagtggagtttcccct
tataataaagagagaatagttaaaggaatatcatacaatgaagacaaccaaaacaagaag
aacaagaagaagaagaaggaaaaagtgcttgaagaggaagatgccagtgctttaggtctt
gaagagaacgaagaagaacaaccagaagacttttctcaatattatcttcctcctgacgaa
atactaggatatatattagaaggatacagcaagtctaaagattcaattcttgccaataga
ataattgtcaattattacattcatttacgtgaatatgacatggcttcagaaagatgccga
gatggtatcagattattggccgatattcaaagaacttttggaataaacttgtcaaacact
aaagaagatttcctttgttccttagcaattgtatatacttattatgaggctccaaagaat
ttcagtcgagcattgcaactttatgacaagattcttgaatcaaataccaccaatattaaa
gccaaagtcggtaaagggttaatctttgccgaacaaggtgatttggaacaagctaaatta
atattggaagaggtattgcaagaacatccagaaaactccgaagcagagttagaatataat
tggtgcttaattaacttaggacaatttgaacaaggtaaacaaggattagaaaagtttatt
agtaaggttactggaactgatttgtacagtggtgaaatccgtgcaaaggctaattggaga
ttagctaaaggatactttatgcaagacgacaccaataaggacaatatcaaacaaagttat
acttatttgattcaatctttaaaagattcagaatcttacgcaccatcatacactttatta
ggtgttttgtttcacgactattatggtgatttagaaaaagcccaaaaatgtttctttaaa
gcatttgatttggatgtcaatgaaatagtagctgccaagtatttggtagaacacgcaacc
gccaagaatgaatgggatgttgcccaggtcttagccaagagagtggtcactaatgaatca
tcaagaagattacttttaagaccttcagatgataaagataactcctggccatatcgtgtt
ttaggatgtggttcccttaatgtccaagatgatgccaaggcagttgaatatttccaaaat
gcattacgtataaactcaaatgattatgaatgttgggttggtttaggtgaagcttattat
aattgtggtagatatgatgctgctgcaaaagttttccatcatgcaattgctatgaaagaa
gaagctccatggaccgtcaagtatttattgggagttgttacttgtgaaatgaaagaattt
aacgagggattgacttatttatatgaagcattggaaagtcaacctaatgaggaatgcatt
ataactgccatttatgaagcacaacttgaaaatacccataagtatgtccattcaggattt
tttggtagagctgctgattcaagtttaaaagcattagaatttatcaaggcttccattctt
tccaattcaacttctcaaaaagtttggaagtcccttggtgactctttacaagtcttctca
aaagtccaactgaatattgataaagttccatttgatgatttaattgctatatttaaacat
attgaaattgatgatattattcttagtgacattacccttgatgagtcaatatcattagcc
catgccattgaattgtttaatcaagacaagaaagtccaatccttgaatatcttcattatt
ctttgtgctattgcgggagtcaaatatcttcccgtgaaagtgaacaaagccctacgttca
accgcattgtataatttaggattggcgttattacaaacctatcaaaatggagagaatgaa
aaataccgagaaaactcagtcacattattcaagaaagcaattcaattggaaaatcataat
cctagctactggattggtttaggtaatgcgtacttctataataatcctcaaatttcccaa
cattgttatattaaagcaacaactttagaaatcagagatgggggtatttggattaattta
gcaatattatttcttaaatacggggatttagaattatcgcagcaggcattcttaagagca
caatctgttgctcctcaagattcacaatcttggttaggtcaagcaattgcatttgagatt
ttaggtgatgaaactaaagcatttacttactatacacatgcattcacattatctaagggg
agattggctgtggcccaattcttgtatggtttatctgtgattaataaacgtgttggtgga
aactttgatcctcgtgatattgaaactgctcaagaatttggtatcagtaatcaagccatg
caacaatacctcaagtacaaaccagatgatgaagatgcattgtcagtcgcgttgactatt
gccgaaagatgtaaagattttgaaaatgcaattaaattgggtaataaattgtgtgagatt
ttagaaaagaaatatgaagagactgaacaagaatcagtgttggaaaatttcagtttaata
aaatcacaagttgcaagaatttatttaggattaggcgattatgaactggctatggaaaat
gcccagatggcattgcaattaattgaaggtgacgactcacatcctgaaatcactttatca
tgccatataactataggtttaagttatttctttaccaatgagtttgaatcttccatacaa
gaattaaagttaattcttagccagtataattcatcccaacgtattgttacattaattgcc
caaattctttatgctcatggcacagaagaatccaagcaagcctccattgatcaattattc
gcccatattgaagagaatggttcttctttgcttgttgtattgacattgggggcaatttct
ttagttgaaaattaccaagagtacttaggagcaatcaaagaagaattacaagggttggat
ttgactgaattggttaatgatacatacagagatgtcccaaggttgcttaccgagatcaat
aatagacttggtagaggtgatgacaaatcggtctggctcaagtatgcttatttattccca
tttgattataatgtatggaaacatgtcagtaatgaaatggccaaggctgtaattacatta
caagatgttaaagttaatggattacaatattcagaaacattattgaaaactggagattta
agagacattcaacgtagtttgatgttgactcctggtaaccaagaagcaattgaagcattg
aagaattgcttttag
DBGET
integrated database retrieval system
