Spathaspora passalidarum: SPAPADRAFT_142668
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Entry
SPAPADRAFT_142668 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SPAPADRAFT_142668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spaa03009
]
SPAPADRAFT_142668
Ribosome biogenesis [BR:
spaa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
SPAPADRAFT_142668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Utp13
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_Vps41
Beta-prop_IFT122_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_SPT8
Beta-prop_RIG_1st
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
WD40_like
Beta-prop_IP5PC_F
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
18870468
NCBI-ProteinID:
XP_007377073
JGI:
142668
UniProt:
G3AS81
LinkDB
All DBs
Position
Unknown
AA seq
796 aa
AA seq
DB search
MASLKTTYKQHNNIEPFYVGGISCTISSDGQFLATPLNEDVIITNLYTNEIIHKIEGDGE
LITNVVITPDGKNLAILSQSQQLRIFDVTLGTVTKTFKLPSPVYISTADFTSSLFAFGGS
DGVITVWDIQNGYVTHSLKGHGTTICSLNFYGELNSTDWKLASGDTMGTVKIWDLVKRKC
KYTIKEHNTAVRGLGFDDEGEYFISAGRDNVAIIYNTKNFRPLFTHPINEQIESAGFVRL
QHNNRQYFYTAGSENILRIWDIKTGELVAKSTTPLKTSEELLIIDVIKLDDTSLYLVVSD
QTIIEVSLQEETITSKEDHLEFPIVKRIAGNHGIIADIRYVGPEFNLVALATNSPALRVI
DPSKPLELKLYEGHTDLLNAIDVSDDGKWIATASKDNEARLWRWNDEEEEFESFARFQGH
AGAVTAISISKSGGNIEVPKFILTGSSDLTIKKWKIPSAPNSTVKVSEYTRRAHDKDINS
IDISPNDEFFATASYDKLAKVWNTDSGETIGILKGHKRGLWDINFYKFDKLIATASGDKT
VKVWSLVDFSCKKTFEGHTNSIQRVKFFNSDSPQLLSAGADGLIKLWDYKSGEVIKSLDN
HDNRIWALDVKEDGQDFISADADGKLTEWVDNTEEELLLKEQQNKERIEQEQNLSNFIKN
KDWANAFLLALTLDHSMRLYNVIKASIETNEDPESPIGSKQLEETIVELNDDQLIKLFKK
VRDWNINFKFFELSQKLLAVILNNIAMEKLVDIPGLMKIMDSIVPYNERHYSRIDDMIEQ
TYILDYAVEQMNKLIA
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttaaaaaccacatataaacagcataataacatagaaccattctatgtggga
ggcatcagttgtaccatatcttccgatggtcaatttttggctactccattaaatgaagat
gtcattattaccaatttatacactaatgaaataatacataaaatagaaggtgatggagag
ttaatcaccaatgtagtcattacaccagacggaaagaacttggctatattatcacaatct
caacagttaagaattttcgatgtgactttaggaaccgtgaccaagacttttaaattgcct
tcgccagtatacatttccactgctgatttcacttcgagtttatttgcatttggtggttcc
gatggggttatcactgtatgggatattcaaaatggttatgttacacattcattaaagggt
cacggtactaccatttgttccttgaatttctatggagaattgaattccactgattggaag
ttggccagtggtgatactatgggtactgtcaagatttgggatttggtcaagagaaaatgt
aagtacacaatcaaggaacataatacagctgtgagaggtctaggattcgatgacgaagga
gaatattttattagtgctggaagagataatgttgctatcatttataacaccaagaatttc
agacctttattcacccatcctattaatgaacagatagaaagtgctgggtttgtcagatta
caacataataacagacaatacttttacaccgctggttcagaaaatattttaagaatatgg
gatatcaagactggagaattagttgcaaaatcaactactccattaaagactagtgaagag
ttattaatcatcgatgttattaagttagatgatacttcattatatttggttgttagtgat
caaacaattattgaagttagtttacaagaagaaacaatcacttccaaagaagatcatttg
gaattcccaatagttaaacgtattgcaggtaaccacggtattatagcggacataagatat
gttggacctgaattcaaccttgtcgcattagctaccaattctccggctcttagagtcatt
gatccttcaaaaccattggaattgaaattatacgagggacacactgatttattgaatgcc
attgacgtttctgatgatggtaagtggatagctactgcctctaaggacaatgaagcaaga
ttatggagatggaacgacgaagaggaagaatttgaatcatttgcaagattccaaggtcat
gctggagccgttactgccatatccatttccaaatctggcggtaacattgaagtccctaaa
tttattcttaccggttccagtgatttgacaatcaaaaaatggaaaataccatctgctcct
aattcgacagtcaaagtttccgaatatactagaagagctcatgataaggatataaattct
attgatatctctcctaatgatgaattctttgctactgcatcctatgataaattggcaaaa
gtatggaacactgattctggagaaactatcggtatattaaaaggacacaaacgtgggtta
tgggatatcaatttctataagtttgataagttgattgctactgcaagtggtgataaaacc
gtcaaggtatggtctttggttgatttcagttgtaaaaagacatttgaaggtcatactaac
tccattcaaagagtcaagttctttaattctgattccccacaattattatcagcaggtgcc
gatggattaatcaagctttgggattacaagagtggagaagtcattaaatctttggataat
catgacaatagaatctgggctcttgatgtgaaagaagatggtcaagattttatcagtgct
gatgccgatgggaaattaactgagtgggttgataacaccgaagaagaattgcttttgaaa
gaacaacagaacaaagaaagaatcgaacaagaacaaaacttgtctaactttatcaagaac
aaggattgggccaatgccttccttttagcattaactctagaccattctatgcgtctttat
aatgtcatcaaggcaagtattgaaactaacgaagatcctgaatcaccaattggttctaag
caattagaagaaacgattgttgaattaaatgatgatcaattgattaagcttttcaaaaag
gtcagagattggaatattaacttcaagtttttcgaattgagtcagaagttattagccgtt
atattgaataatatagccatggaaaagttggttgatattcctggattgatgaaaatcatg
gattctatagttccttataacgaaagacattattcaagaattgatgatatgattgaacaa
acgtatatcttggattatgctgttgaacaaatgaataaacttatagcataa
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