KEGG   Spathaspora passalidarum: SPAPADRAFT_48042
Entry
SPAPADRAFT_48042  CDS       T03101                                 
Name
(RefSeq) hypothetical protein
  KO
K07573  exosome complex component CSL4
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAPADRAFT_48042
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spaa03019]
    SPAPADRAFT_48042
Messenger RNA biogenesis [BR:spaa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SPAPADRAFT_48042
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SPAPADRAFT_48042
SSDB
Motif
Pfam: EXOSC1 CSL4_N
Other DBs
NCBI-GeneID: 18871170
NCBI-ProteinID: XP_007372397
JGI: 48042
UniProt: G3AFJ5
LinkDB
Position
Unknown
AA seq 277 aa
MSVVVPGQYITPVYKLDESSQRPLKFSPGRGTTISDITTDTNTTKSIPVITSTILGTVHI
KQIDTDDKEFTTSIVTVVPKGQTFIEESADTETSINLPKENDVVLIRITRISPKQVFGEI
ISVERANGSGGNILADSGVGANGSTAHASMPPGSATTITQHAFNQSTIASSSTTAIQVPD
IGENFRGVIRSQDIRSTERDKVKVIESYRPGDIVRAVIISLGDGSNYYLSTARNDLGVVF
AKSENGAGELMYPIDWEHMIDIKTGEIEMRKNANPFV
NT seq 834 nt   +upstreamnt  +downstreamnt
atgtcagtcgtagtgccaggccaatatatcactcccgtatacaaactagacgagtctagt
caacgtccgttgaagttttctcctggtagaggaaccaccatttctgatataaccaccgat
accaacaccacgaagtccatccccgttataacatcaaccatactcggaaccgtccacatt
aaacaaatagacaccgatgataaggagtttaccaccagcattgtcactgttgttcccaaa
ggacagacattcattgaggagtccgccgatacggaaacttcgattaatttaccaaaggag
aacgatgtggtgttgattagaattaccaggatctcgcctaaacaagtatttggtgagatc
atctcggtggaaagagccaatggaagcggcgggaatatcttggcagattcaggagtaggt
gccaatggaagcacagctcatgccctgatgccacctggttcagcaaccaccatcacccaa
catgcattcaaccaatcgacaattgccctgtcttcaaccaccgccattcaagtgcctgat
attggagagaatttccgtggggtgattcgatctcaagatatacgatctactgaaagagat
aaagtcaaggtaattgaaagctacagacctggagatattgttcgagctgtgattatctct
cttggtgatgggtcgaactattacttgagcactgctagaaacgatttaggtgttgtgttt
gccaagagtgaaaatggtgctggagagttgatgtatcctatagactgggaacacatgatc
gatatcaaaacaggagagatcgaaatgagaaagaatgccaatccgtttgtataa

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