Spathaspora passalidarum: SPAPADRAFT_50228
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Entry
SPAPADRAFT_50228 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K12879
THO complex subunit 2
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03013
Nucleocytoplasmic transport
spaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAPADRAFT_50228
09122 Translation
03013 Nucleocytoplasmic transport
SPAPADRAFT_50228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_50228
03041 Spliceosome [BR:
spaa03041
]
SPAPADRAFT_50228
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
SPAPADRAFT_50228
Spliceosome [BR:
spaa03041
]
Complex C
Other components
EJC/TREX
SPAPADRAFT_50228
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SPAPADRAFT_50228
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THOC2_N
Tho2
Thoc2
Motif
Other DBs
NCBI-GeneID:
18871419
NCBI-ProteinID:
XP_007374852
JGI:
50228
UniProt:
G3ALY4
LinkDB
All DBs
Position
Unknown
AA seq
1654 aa
AA seq
DB search
MSGELSTYFTDETINEFQEGGIEPLMEVLESYEESNQDSEDAVALLFTELILSFEDNKLE
LEHIVQFLSQSITNDELARIFCQVLNAFPATENLQKLLVLISRKENVIKPETLALHIGSD
FLKESEIVPKAVYTKALNSRIRDEFYTQKKFNLLHEETEGYAKFFVEIYTIFRNDGTEFK
IDYALQIIEKLIGHYSLDPNRCLDLLLHIFDSVFVPKVSEALQLIRKSRWWPSVESDNTS
ISTLSKGGNENGAKVLGLRLMKLPAGHELPEGFKILITCLIKEGFISFGSMYKYMSPNEE
AMNELEKDYQKRLEEEVSKAGANALALAAPLADDEDEGRDQNGGKGDQKSTKSETKPKKS
IEEKLVTNYKFQFLKTFLSNGLYMPSLFLLTKYPFLAQIDPEIPVLLNRLFDALIQPLYE
QVRVFSSEDLQGLQEPKQIAFVRPHNGVYYEAATTTNLLTFKPTLKSYYHKKFHYFYEAW
NTKLPIINDIESFITVSKEFLKFNGVNLAQNTQAFIKVCEIVLWDLKNNISDEARKVEWF
HYFRNFIFPAMCVIEENSIAIDKAYAILSLYPIEDRFSVYGELYSVLAKNNPLIKMAYNK
AEKSTKDVLKRLSKENVRPMMRRLAKISFSNPLPCLLTILQQIESYDNLNTLVVETARYF
SSYGWDNLTVAILMRLTAAGRNTTHDDGMVERQWIQSLASFIGKICQRYPRAIDIKTILS
FLLKSFHSGDTIGLLVLKEMFISMGGIQLITNLTLHQIDMINCGESLQKIVYRTIDDLRY
ERFASGKHLVRCFLELDAINELLVLLVHITNEVIYESDKIHLKVLASRSDDLTTVIRLFN
TLVGFFGDSEEIKDKLLPLDELYTKYGVPMEWAFELWRPTISKTLSNDDETFSSSLETIK
DQIADLIPKNSLEYLSPGLVVCFWQLSLKDVNYSRSLYETETSKLESNIRSLRESIAMNS
RDKDVARATIDRQRKELYENEQYIKVLPSEMNAHYEHDKLITAKLQAECASWFLSDDPGK
TAIQIEQFLQCCVLPRCIHSSFDAVFVARFIFKLHELKTENYSLIALLDQLTKNKILFGT
LFTLTPTEAENLGLFFADVLRTLQGWTKENRFQENEDLLDAAGDVISFDDFRVLLYGYHT
TILEEIEASLGVTEYMSRRNAITFLKNLLGVYPTVEDHCERVVRIIEKISLTEEREDLKL
SSGALVGHVKSRAKTWLKIWEFIPMSEEEKEKLIKEKQEAQRKEIEKKLEEKRRLLELKK
EEEKLAKEEELKKRTSAINYDSQKSSSRPDTRGAASSSRGRYDNYSRYAPTPKEMSVEAA
EKESDVESKVNKNESEDRKSSGDHKDAQPEISKIEKEEESKDSQSTKKNPQEDDLIIPRK
DSGRAKSRDFQRGSAPTGPSSQQSDSVNPPEKSQDETRATGGDLKSRLSQVKREFQQRTS
KESTSEQQDKSQPQTASTVKTEGYTDQEESQTKKRAPLPPQQSIRLQSSAPQQESHTHSR
VPLPPQDTLKTRSAAPSAPVSRFSDSRGGRGTPRHHHTYNNQRQPQSNYNRASGSSSTGS
NAAASSASGLTAATTPLPPPPPPPPPPPPPPVSTKRNETYNSGQFRNGRESYGRSDSYNN
RNHDGKDSRQGGRYDNKRKQDGYGGRGYDKKSRY
NT seq
4965 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcgaattgtctacatacttcactgatgaaacaatcaatgaattccaagaaggt
ggcatagaacctttgatggaagtattggaatcgtatgaagaatccaaccaagatagtgaa
gatgcagttgcattgttatttaccgaattgattctttcatttgaagacaataaattggaa
ttagagcatattgtccagtttttactgcaatcaatcactaatgatgagctcgcaagaata
ttctgtcaagttttgaatgcatttcctgctactgaaaacctccaaaaactattggtcttg
attagtagaaaagagaacgtgattaaaccagaaacacttgctttacatataggctcagat
ttcctcaaggaactggaaatagttccaaaagccgtttacaccaaggcattgaatagtaga
atcagggatgagttttacacccaaaagaagttcaatttgttacacgaagaaactgaagga
tatgccaaattttttgtggaaatatatacaatatttaggaatgatggcactgagttcaaa
atagattatgctcttcaaattatagaaaaattaattggtcattacagtttggatccaaat
agatgccttgacttattactccatatatttgattcggtatttgttcccaaggtatcagag
gcattacagttgataagaaaatcacgatggtggccttcagtagaaagcgacaacacatca
attctgaccttatccaagggaggaaatgagaatggagccaaagttttaggtttaagatta
atgaaactaccagctggacacgaattacccgaagggttcaagattttgataacttgctta
ataaaagaagggttcatcagttttggtagcatgtataaatacatgtctcctaatgaagaa
gcaatgaatgagttagaaaaggattaccaaaagagactcgaggaagaagtgtcaaaagca
ggagcaaatgctcttgccctagctgcaccattagctgacgatgaagatgaaggtcgagac
caaaacggtggaaagggagaccaaaaatctacaaaatctgaaactaaaccaaaaaagtca
attgaagagaagttagttacgaattataaatttcaatttttgaaaacattcttaagtaat
ggtctttatatgccatctttattcctcctcacaaaatatccctttttggcccaaattgat
ccagaaataccagttttattgaatagattgtttgatgctttgattcaacctttgtatgag
caagttcgtgtcttttcctccgaagatttacaaggtttacaagaacccaaacagattgct
tttgttagaccacataatggcgtttattatgaagcagctaccaccacaaatttacttaca
ttcaaaccaactttaaaaagttattatcacaagaaatttcactatttctatgaagcatgg
aatacaaaacttccaataattaatgatattgaatcgtttattaccgtttctaaggaattt
cttaagtttaacggagtgaatcttgcacaaaacacccaggcatttataaaagtttgtgag
attgtgctctgggatttaaagaacaacatttctgatgaagcacgaaaagtggaatggttt
cattatttcagaaacttcatctttccggccatgtgtgtaattgaagaaaactcaattgca
attgataaagcctatgctatattgtcgttgtatcctatagaagataggttcagtgtatat
ggtgagttatacctggtgttagccaagaacaacccattgattaaaatggcgtataacaaa
gctgaaaagtcaactaaagacgttttaaagaggttgtccaaggaaaatgtccgtccaatg
atgagaagattagctaaaatcagtttttccaacccattgccatgcttattaaccatttta
caacaaattgaaagttatgataatttgaatacattagttgtggaaactgcaagatatttc
agtagttatggttgggataacttgactgttgctattttgatgagattaactgccgccggc
agaaacactacccacgacgatggtatggttgaacgtcaatggatccaatcattagcatca
ttcattggtaaaatctgtcagagatatccaagagccattgatataaaaactatattgtca
ttcttattgaaatcatttcattctggtgacacaatcgggttgttggttttgaaagaaatg
tttatatctatgggtggtattcagttgattacaaatttaactttacaccaaattgatatg
atcaactgtggtgaatcattacagaagattgtctatcgtacaatcgatgacttgagatat
gaacgttttgcatcaggaaaacatcttgtcaggtgcttcttggaattagatgctattaat
gagcttttagtattacttgttcacattaccaatgaagtgatttatgaaagtgataagatc
catttaaaggttttggcaagcagaagtgacgatttaaccacggtaataaggttgtttaat
actcttgtgggattctttggagactctgaagaaataaaagacaaattgttacctttagat
gaattatacactaaatatggagttcctatggaatgggcttttgaactatggcgcccaacc
atatcaaagacattgtcgaatgatgatgagactttttcttcatcattagaaacaatcaag
gatcaaattgctgatttaattcctaaaaattctcttgaatatttgtctcccggattagtg
gtttgtttctggcaattatcgttgaaggatgtgaactattcaagatccctctatgaaact
gaaacttcgaagttagaatctaatatcaggagcttgagagagtcaattgctatgaattct
agagataaagatgtcgccagagctacgattgatagacaaagaaaagaattatatgagaat
gaacaatacattaaagtccttccatcagaaatgaacgcgcattatgagcacgataagtta
atcacagcaaaattacaagctgaatgtgctagttggtttttatcggatgatcctggaaag
acggcaattcaaattgaacaattccttcaatgttgtgtattaccgagatgtattcactca
tcctttgacgccgtctttgtagcaagattcatattcaagttacatgaattgaaaacggaa
aattattctttgattgcattattggatcaacttaccaaaaataagatattgtttggtact
ttgttcacattgacaccaacagaggctgaaaacttggggttgttctttgctgacgtttta
agaactttgcaaggatggactaaagaaaatagatttcaagaaaatgaagatcttttggat
gccgctggtgacgttatttcatttgacgatttcagagtacttctttatggatatcatact
accattttagaagaaattgaggcatctttgggtgttactgaatatatgtcacgtagaaat
gccattacattcttgaagaacttattgggagtctatccaacagttgaggatcattgtgaa
agagttgtacgtataattgaaaagatttctttgactgaagaaagagaagatttgaagtta
tcatctggtgctttagttggtcatgttaaatcccgagctaagacatggttaaagatttgg
gaattcattccaatgtcggaagaagaaaaggagaaattgattaaggaaaaacaagaagct
caaaggaaagaaatagaaaagaagttggaagaaaagagaaggttgcttgaattgaagaaa
gaagaggagaaattggccaaagaagaagaattaaagaaacggacctcagcaattaattat
gactcccaaaaatcatcatctagacctgatacaaggggtgctgcaagttcgtcaagaggc
cgttatgataattattctaggtacgcaccaacaccaaaagaaatgagtgtcgaagctgct
gaaaaggaatccgatgttgaatccaaggttaataagaatgaaagtgaggataggaagagt
tcaggtgaccataaagatgcacaaccagaaatttccaagattgaaaaagaagaagagagc
aaagattcccaatctaccaagaagaatcctcaagaagatgatcttattatacccaggaaa
gatagcggaagagctaaaagcagggacttccaacgtggatctgccccaacaggaccatca
agccaacagtctgattcggtgaacccacctgagaaatcccaagatgaaacccgggcaact
ggtggagatttgaaatcaaggttatcccaagttaaacgagaatttcaacaaaggacatcc
aaggagagcacgagtgaacaacaagacaagtctcaaccacagaccgcatccacagtcaaa
actgaaggatatactgatcaagaagaatctcaaaccaagaagcgggcaccattgcctcca
caacaatcaattcgtttgcaatcgagtgctccacaacaggaatctcatacacattcgcgt
gttccattgcctcctcaagatactttaaagactagatcagcagcaccatctgcaccagtg
agtcgatttagcgattcaaggggtggaagaggtacacctagacaccatcatacctacaac
aaccaacgtcaaccgcaatcaaactataacagagcatcaggatcttcttcaacaggatca
aatgccgcagcttcttctgcaagtggactaactgctgcaacaaccccacttccaccacca
ccaccaccacctcctcctcctcctccaccccctgttagtaccaaacgtaatgaaacttac
aattctggtcaattcaggaacggaagagaatcgtatggcagaagcgatagctataataac
aggaaccatgacggcaaagactccagacaaggaggtagatacgacaataaaagaaagcaa
gatggttatgggggtagaggatacgataagaaatctagatattaa
DBGET
integrated database retrieval system
