Spathaspora passalidarum: SPAPADRAFT_52119
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Entry
SPAPADRAFT_52119 CDS
T03101
Name
(RefSeq) beta transducin
KO
K14556
U3 small nucleolar RNA-associated protein 12
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SPAPADRAFT_52119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
spaa03009
]
SPAPADRAFT_52119
Ribosome biogenesis [BR:
spaa03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
SPAPADRAFT_52119
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_2nd
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40
Beta-prop_IFT122_1st
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Utp12
ANAPC4_WD40
DSE1_N
Beta-prop_NOL10_N
ASA1
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_VPS8
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_EIPR1
CFAP251_N
Beta-prop_WDR41
PEP5_VPS11_N
WDR54
Beta-prop_SPT8
Beta-prop_HPS5
RMC1_N
Ge1_WD40
Beta-prop_Vps41
WD40_RFWD3
PAC11
WD40_like
WD_LRWD1
Beta-prop_WDR11_2nd
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
18871630
NCBI-ProteinID:
XP_007376962
JGI:
52119
UniProt:
G3ATG6
LinkDB
All DBs
Position
Unknown
AA seq
960 aa
AA seq
DB search
MVKSYDRYDQEKSFGVITSQSNIVWLPPSDVQSSSTSAGRALTSALEEILIWDIKTGEIL
SRLRDGLTPGASNAPTSSPPSVVTTLAFHEMTNIVAAGYGDGSVKVWDVSSASVVISFTG
HKSAITQLKFDRSGTRLVSGASDSTIILWDLVGETGLFKLKGHKGPISGIEFLSEVYDND
NVDDLEDYLLSSSRDGLIKLWELKSQQCIETHLAHSNECWSMAVDPKRRDMVITSGNKDQ
VKVWHLDLGEEDGSKITERGSFTKTSKNRSNEIVFKRAKVGSSYLDLFAVQNSDRTVELF
RIRSEDEIKRGITKRTKRLKEKGLDDDEILQSIQESEISMLITPFTTLRTMAKIKSISFT
NTSKQLNLLISLTNNSIEYHNVPIPENPKKATPGELYSVKKHSLDMAGHRFDIRAMDVSD
DSKLLATASNGELKIWNLRTYNVIRTFTLEGGYALCCKFLPGGSLIVVGFKNGDLELYDL
ATSSLVDRVERAHSLANDDESAAIWSLDVSPDGKTLVTGGNDKCVKFWNFKVEQEVVPGT
DAVISQLRFKHTQTLDLNEDVLCVKISPDGKYLAVSLLNNNVQVVFFDSMKLFLTLYGHK
LPVLSIDISSDSKLIITSSADKNVKIWGLDFGDCHKSIFAHQDSVMNVKFIGDSHNFFSS
GKDGLIKYWDGDKFECIQKLAAHQSEVWCMAISSDGLVMVSTSHDHSIRVWSATDDQVFL
EEEREKEMDELYENTLLNQVAEEERPRDDDEEEVDEATKVSRQTMETLKAGEKLMEALDI
GIEDIEAVKEYESLVKQGKSAVKPTPNAILLAFNMTGWEYVLSVLIKIRPSQIDDALLVL
PFSYSLKLLQLIEIWTNKQNINTNIVNLSLICKVLFFIISSNANEFINQKDPAIKNQLIK
VKQQLRDQLSGTCRQLGVNTEALKFVKQQWKLTHETEFIDERQQREYEDKKAIKRTYTTI
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaatcatatgatagatatgatcaggagaaatcctttggggttataacctcacag
tccaacatagtatggcttccaccatccgacgtacagtcctcgtccacatctgcagggcga
gcattaacttctgcccttgaagaaatactcatttgggatatcaagaccggagaaattctc
agtcgactcagagatggccttacacctggtgcttctaacgctcctacttcatcaccacct
agtgtagtcaccactttagcattccatgaaatgaccaacatcgtggcagcagggtatggt
gatgggagtgtcaaggtgtgggatgtgagttcagccagtgtcgttatttcattcacgggc
cacaagagtgcaattacccagttgaagtttgatagaagtggaacgagattggtttcagga
gccagcgactccaccatcattctttgggatttagtgggtgaaactgggttgtttaaattg
aaaggacacaagggaccaatcagtggaattgagttcttgtcagaagtgtacgacaatgat
aatgtcgatgatttggaagattacttgttgagtagttcaagagacgggttgatcaaattg
tgggaattgaagagtcagcaatgtatcgagactcacttggcccatctgaatgaatgttgg
tccatggccgtggatccaaaaagaagagatatggtgatcaccagtgggaacaaagatcaa
gttaaagtatggcatttggaccttggcgaagaagacggatctaagattactgaacgagga
ctgtttaccaagaccagtaagaacagaagtaatgaaattgtgttcaagagagcaaaagtc
ggatctagttaccttgacttgtttgctgttcaaaattcagatcgaacagtcgagcttttc
cgaatcagatccgaagacgaaataaaacgaggcataaccaaacgtactaaaagactaaag
gaaaaaggattagacgatgatgaaattttgcaatcgatccaagaatcggaaatatcaatg
ttgatcactccattcacaaccttgcgtaccatggccaagataaagtccattctgttcacc
aatacttccaaacaactcaacttgttgatttcattaaccaataacagcattgaatatcac
aatgtaccaatcccagaaaaccccaaaaaagccacccctggtgaattatactcggtcaag
aaacactcgcttgatatggcgggtcataggtttgacattcgtgccatggatgtttccgac
gatagcaaactcttggccactgcttccaatggagaactcaagatttggaaccttcgcaca
tataacgtcattagaacatttactttagaaggtggatatgccctctgttgcaagttcttg
cctggtggaagtttaattgttgttgggttcaagaatggggatttagagttgtacgatttg
gctacttcttccctagttgatagagtcgaaagagcgcattcactcgctaatgatgacgaa
tctgctgctatttggtcgcttgatgtttcacccgatggaaagactttggttactggtggt
aatgacaagtgtgttaaattttggaacttcaaagttgaacaagaggttgtgccgggaacc
gatgccgttatatcccaattgcgtttcaagcacacccaaacgttagacttgaacgaagac
gttctttgtgttaagatttcccctgatgggaagtatctcgctgtttcgcttttgaataac
aacgtccaagttgtatttttcgacagtatgaaattattccttacgttatacggacacaag
ttacccgtgttatcgattgacatttcctccgattccaagttaatcatcacctcatcggcc
gataagaatgttaagatctgggggttggatttcggggattgtcacaagtccattttcgcc
catcaggattcggtcatgaatgtcaaatttattggcgacagtcataacttcttctccagt
ggtaaggacgggttgatcaagtactgggatggggacaagtttgagtgtattcagaaatta
gcagctcaccagagtgaagtatggtgtatggctatcagtagtgatgggttagttatggtg
agtacttcgcatgaccactctatcagagtatggctggctactgatgaccaagtgttttta
gaagaagaaagagaaaaagaaatggacgaattgtacgaaaacacgttattgaaccaagtt
gccgaagaagaaagaccaagagacgacgatgaagaggaagtagatgaagccacgaaagtc
agtagacaaaccatggagacattaaaagctggtgaaaagttgatggaagcccttgatatt
ggaatcgaagatatcgaagcggttaaagagtatgagctgttggtcaaacaaggcaaatcc
gccgtgaaacctactccaaatgccatcttgcttgcattcaatatgactgggtgggaatat
gtccttagtgtgttgatcaagatcagacccagtcaaatcgacgatgctttgcttgtactt
ccgttttcatactcgttgaagttgttgcaattgattgaaatttggaccaacaagcaaaac
ataaacaccaatattgtgaatttgtcacttatttgtaaagtattgtttttcataatcagt
tccaatgccaatgagtttatcaatcaaaaggacccggctatcaagaaccagttgattaaa
gtgaagcagcaattacgggaccaattaagtggaacatgtcgtcaacttggtgttaacact
gaagcattgaagtttgtcaaacaacaatggaagttgacgcatgagactgagtttatagat
gaacgtcaacagagagagtacgaggataaaaaggcaatcaagagaacatacaccactata
taa
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integrated database retrieval system