KEGG   Spathaspora passalidarum: SPAPADRAFT_53612
Entry
SPAPADRAFT_53612  CDS       T03101                                 
Name
(RefSeq) ATP-dependent RNA helicase
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03013  Nucleocytoplasmic transport
spaa03015  mRNA surveillance pathway
spaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPAPADRAFT_53612
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPAPADRAFT_53612
   03015 mRNA surveillance pathway
    SPAPADRAFT_53612
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spaa03019]
    SPAPADRAFT_53612
   03041 Spliceosome [BR:spaa03041]
    SPAPADRAFT_53612
   03009 Ribosome biogenesis [BR:spaa03009]
    SPAPADRAFT_53612
   03012 Translation factors [BR:spaa03012]
    SPAPADRAFT_53612
Enzymes [BR:spaa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SPAPADRAFT_53612
Messenger RNA biogenesis [BR:spaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     SPAPADRAFT_53612
   mRNA cycle factors
    Stress granule specific factors
     SPAPADRAFT_53612
Spliceosome [BR:spaa03041]
 Complex C
  Other components
   EJC/TREX
    SPAPADRAFT_53612
Ribosome biogenesis [BR:spaa03009]
 Eukaryotic type
  90S particles
   Helicases
    SPAPADRAFT_53612
Translation factors [BR:spaa03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    SPAPADRAFT_53612
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 CMS1 DUF3419 AAA NAT10_TcmA_helicase SMIM39
Other DBs
NCBI-GeneID: 18871801
NCBI-ProteinID: XP_007372742
JGI: 53612
UniProt: G3AGJ1
LinkDB
Position
Unknown
AA seq 400 aa
MDEFDRELDNELEFSHKSTKGIKVHRTFESMKLKPDLLKGIYGYGFEAPSAIQSRAIMQI
ISGKDTIAQAQSGTGKTATFSIGMLQVIDTKSHDCQALILSPTRELAVQIENVVKHLGDY
MNIHTHALIGGINVGQDVKKLQTSQPQIVSGTPGRVLDVLKRRNLSPRHIKILILDEADE
LFTKGFKEQIYEIYKQLPPGAQVVVVSATLSPEVLEMTNKFTTDPVKILVKRDEISLSGI
KQYYVQCEKEEWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLVEQMRKQNFTVVGMHGDM
KQDERDSIMNDFRTGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRF
GRKGTAINLITKADVQTQKELEKFYSTKIKEMPMNINDIM
NT seq 1203 nt   +upstreamnt  +downstreamnt
atggacgagtttgatagagagttagataatgaattggagtttagtcataaatccactaag
gggattaaagtccatcgtacttttgaaagtatgaaactaaaacctgatcttttaaagggg
atttacggatatgggtttgaagcaccatcagccattcaatcacgggcaattatgcaaatt
ataagtggtaaagatactatagcacaagcacaatcaggtactggtaagactgccacgttc
tccatagggatgcttcaagtcatcgacactaaatcccatgattgccaagcattgatcttg
tctcctacaagggaattggcggtgcagatcgaaaatgttgttaaacatttgggtgactat
atgaatattcatactcatgcattaattggtggaattaatgtgggacaagatgtgaaaaaa
ttacaaactagccaaccacaaatagtcagtggaactcctggtcgtgtacttgatgtgctc
aaaagaagaaacctatctccccgacatatcaagatattgattcttgatgaagcggatgaa
ttatttacaaaggggtttaaagaacaaatttatgaaatttataagcagctaccacctggg
gctcaagtggttgtggtaagtgcaacactttcaccagaagtgttggaaatgacaaacaag
tttactactgacccagtaaaaattttggttaaacgagatgaaatatcattgtctggtatt
aaacaatactatgttcagtgtgaaaaggaagaatggaagtttgacacattgtgtgacttg
tatgataatctaaccattacccaagctgtgatattctgtaatactaaactcaaagtcaat
tggcttgttgagcaaatgagaaagcaaaactttactgtggttggcatgcatggagatatg
aagcaagatgaacgagactctattatgaatgatttcagaactggcaattcaagagtgttg
atctcaaccgatgtttgggctagagggattgatgttcagcaggtgtcacttgttatcaac
tatgatttacctactgataaagagaactacattcataggattgggagatctgggaggttt
ggtagaaagggaacggctatcaatttaataactaaagctgatgtacaaacccaaaaagag
cttgaaaagttttattctacaaagattaaggaaatgcccatgaacatcaatgatattatg
tag

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