KEGG   Spathaspora passalidarum: SPAPADRAFT_54105
Entry
SPAPADRAFT_54105  CDS       T03101                                 
Name
(RefSeq) hypothetical protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAPADRAFT_54105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spaa03019]
    SPAPADRAFT_54105
Messenger RNA biogenesis [BR:spaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPAPADRAFT_54105
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     SPAPADRAFT_54105
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 18871837
NCBI-ProteinID: XP_007373405
JGI: 54105
UniProt: G3AJ64
LinkDB
Position
Unknown
AA seq 166 aa
MSATPEPSPAPVQTQAPARDPLAPNVEDLYLESYAFTTAAALVGSVDRKIFVLLRDGRNL
FGILRTFDQFANLVLQDTYERIYLDDKFAEVYRGVFMVRGENVVMMGELDIDREDDHLEV
MQQIDFREAEDELKQKHKQIVSEQKIRSKKLLEKGLINDFVRGDMY
NT seq 501 nt   +upstreamnt  +downstreamnt
atgagtgccaccccagaaccttcacctgctccagtacaaacacaagcaccagcacgagac
ccattggctcctaatgtggaagacctttatcttgaatcgtatgccttcaccacggcagca
gccttggttgggtccgtcgataggaaaatctttgtgttgttaagagacggacgcaactta
tttgggatcttacgtacatttgaccaatttgctaatttggtattgcaagacacatacgag
agaatatatcttgatgacaagtttgctgaagtatatcgaggcgtatttatggttcgtggt
gagaatgtggttatgatgggagaattagatattgaccgtgaagacgaccatttggaagtg
atgcaacaaatagatttcagagaggccgaagatgaattgaaacaaaaacacaagcaaatt
gtcagtgaacaaaaaataaggagcaagaaattgttggaaaagggtttgattaatgatttc
gtaaggggagatatgtactag

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