Spathaspora passalidarum: SPAPADRAFT_54105
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Entry
SPAPADRAFT_54105 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAPADRAFT_54105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_54105
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPAPADRAFT_54105
mRNA degradation factors
5'-3' decay
Lsm complex
SPAPADRAFT_54105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
18871837
NCBI-ProteinID:
XP_007373405
JGI:
54105
UniProt:
G3AJ64
LinkDB
All DBs
Position
Unknown
AA seq
166 aa
AA seq
DB search
MSATPEPSPAPVQTQAPARDPLAPNVEDLYLESYAFTTAAALVGSVDRKIFVLLRDGRNL
FGILRTFDQFANLVLQDTYERIYLDDKFAEVYRGVFMVRGENVVMMGELDIDREDDHLEV
MQQIDFREAEDELKQKHKQIVSEQKIRSKKLLEKGLINDFVRGDMY
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccaccccagaaccttcacctgctccagtacaaacacaagcaccagcacgagac
ccattggctcctaatgtggaagacctttatcttgaatcgtatgccttcaccacggcagca
gccttggttgggtccgtcgataggaaaatctttgtgttgttaagagacggacgcaactta
tttgggatcttacgtacatttgaccaatttgctaatttggtattgcaagacacatacgag
agaatatatcttgatgacaagtttgctgaagtatatcgaggcgtatttatggttcgtggt
gagaatgtggttatgatgggagaattagatattgaccgtgaagacgaccatttggaagtg
atgcaacaaatagatttcagagaggccgaagatgaattgaaacaaaaacacaagcaaatt
gtcagtgaacaaaaaataaggagcaagaaattgttggaaaagggtttgattaatgatttc
gtaaggggagatatgtactag
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