KEGG   Spathaspora passalidarum: SPAPADRAFT_55266
Entry
SPAPADRAFT_55266  CDS       T03101                                 
Name
(RefSeq) hypothetical protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPAPADRAFT_55266
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spaa03021]
    SPAPADRAFT_55266
   03019 Messenger RNA biogenesis [BR:spaa03019]
    SPAPADRAFT_55266
Transcription machinery [BR:spaa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SPAPADRAFT_55266
Messenger RNA biogenesis [BR:spaa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     SPAPADRAFT_55266
SSDB
Motif
Pfam: zf-CCCH Torus zf_CCCH_4 zf-CCCH_2 zf-CCCH_3 zf-CCCH_DUS3L zf-CCCH_RBM22
Other DBs
NCBI-GeneID: 18871923
NCBI-ProteinID: XP_007374899
JGI: 55266
UniProt: G3AM86
LinkDB
Position
Unknown
AA seq 216 aa
MLHSIINPDPKNLHFKFEPFLHQEYNLGLDPDRPVCQFYNPQKPNDSCPNGNLCPNKHVS
SMYSNKIVCKHWLRGLCKKSDHCEFLHEYNLRKMPECLFFSKNGFCTQTPECLYLHIDPS
SKIPECLNYNKGFCPDGPNCKNRHVRRILCPLFLAGFCPKGFECEYTHPKFEGIVGRLRI
KPDTDTDGEASTGETPEGNANENNDDDDSAYTPQTD
NT seq 651 nt   +upstreamnt  +downstreamnt
atgctacattcaataataaaccccgatccaaagaatctacatttcaaattcgagccgttt
cttcatcaagaatataatctcgggcttgatcccgatagacctgtttgtcaattttacaat
ccccagaaacccaacgactcgtgccccaatggcaacctatgcccaaacaaacatgtgtca
tctatgtattccaataaaatagtgtgtaagcattggcttcgtggtctctgtaagaaatca
gatcattgtgagtttctccatgaatataacctacggaaaatgcccgagtgtctattcttt
tctaaaaatggattctgtacccaaactccagaatgcttgtatttgcacattgacccgctg
ctgaagataccggaatgtttaaactataataaagggttctgcccggatggccccaactgt
aagaatagacacgtgaggagaatattatgcccgttatttcttgctgggttttgtccaaag
ggatttgaatgtgaatacactcatcccaaattcgaaggtatagtaggaagattacgaata
aaaccagacactgacacagacggggaagcatctacaggagaaactcctgaaggaaatgct
aatgaaaataacgatgacgatgacagtgcatatacaccgcaaacagattaa

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