Spathaspora passalidarum: SPAPADRAFT_57398
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Entry
SPAPADRAFT_57398 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAPADRAFT_57398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_57398
03041 Spliceosome [BR:
spaa03041
]
SPAPADRAFT_57398
03009 Ribosome biogenesis [BR:
spaa03009
]
SPAPADRAFT_57398
03016 Transfer RNA biogenesis [BR:
spaa03016
]
SPAPADRAFT_57398
Enzymes [BR:
spaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SPAPADRAFT_57398
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SPAPADRAFT_57398
Spliceosome [BR:
spaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SPAPADRAFT_57398
Complex C
U4/U6.U5 tri-SnRNP related factors
SPAPADRAFT_57398
Ribosome biogenesis [BR:
spaa03009
]
Eukaryotic type
Pre-60S particles
Helicases
SPAPADRAFT_57398
Transfer RNA biogenesis [BR:
spaa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SPAPADRAFT_57398
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AIF-1
nSTAND3
Motif
Other DBs
NCBI-GeneID:
18872116
NCBI-ProteinID:
XP_007377656
JGI:
57398
UniProt:
G3AV87
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MDDLFDVFDEAPAAAPAKIEEIKHVEHKKRQSENTAKQTGPKKQKTEAKPEIKPVVFDSV
EIEASREVAVSAGLLSSATPTPEDKLKLRHQVRHQVAIPPSYPYTPIAEHKRVKEARTYP
FVLDPFQDTSISCIDRNESVLVSAHTSAGKTVVAEYAIAQSLRDKQRVIYTSPIKALSNQ
KYRELQAEFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM
RDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKIHNQPCHVVYTDFRPTPLQ
HYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNTGDDPSSADKGKGKKGQTFKGGKG
DASSDIYKIVKMIYMKRYNPVIVFSFSKRDCEKLALKMSKLDFNTDEEREALTKIFQNAI
NLLPEADKDLPQIKNILPLLKRGIGIHHSGLLPILKEIIEILFQEGFLKVLFATETFSIG
LNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA
KGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLESSFFQFQNAASVPVMQKSMDEL
SVELEQIQVDDEPTVKDYYEFKAQLTKYQADMRKVITHPGHILPFLQEGRVVKVKVGEHD
YDWGMVVSFAKRNAKNQDFTPHEAYIVTVFVCTMFVDSPVNLIKSFNPVLPEGIRPAVRG
SEKSRAEYIPITLDSIEKISSVRLRVPSDLKSAEAKRSLVKTLKDLPKRLPDGIPLMDPV
ESMKINDNEFKLLLRKIDVLEAKLVSNPLHNTARLAPLYEKYASKVEIENKIKSLKEKIL
EAEAVIQLDDLRNRKRVLRRLGFTKTDNDIIELKGRVACEISTGDELLLTELIFNGNFNE
LTPEQCAALLSCFVFQERAKEVPRLKPELAEPLKSMQEMATKVAKVSRECKIDIIEKDYV
ESFRAELMEVTFAWCKGATFSQICKMTDVFEGSLIRMFRRLEELIRQLVIAAKAIGNSEL
ETKMEAALELVHRDIVSAGSLYL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggacgacttattcgacgtattcgacgaggcgccagctgctgccccagccaagatcgaa
gagattaaacatgttgaacacaagaagcgtcaatcggagaacaccgctaagcaaaccggt
cccaaaaaacaaaagaccgaagccaagccagaaatcaaaccggtagtgtttgactcggtt
gaaattgaagcatcacgagaagtcgccgtctcagccggccttctctcctctgccacacct
actcctgaagacaagttgaagttgcgccatcaagtgcgtcaccaggtggccatcccgcct
tcatacccttacactcctatcgccgaacacaagcgggtcaaagaagccagaacgtacccg
ttcgtgttggatccattccaggatacgtctatttcctgtatcgatagaaacgagagtgtt
ttagtatctgcgcatacttccgctggtaagaccgtggtggccgagtacgccattgcccaa
tcgctccgcgataaacaacgtgtgatttacacttctcccatcaaagcgttgagtaaccaa
aagtatcgtgaactccaggcagaattcggcgatgttgggttgatgacaggtgatgtcacc
atcaaccctgacgccgggtgtcttgtgatgaccaccgagattttgagaagtatgttgtac
agaggatcggaagtcatgcgggaagtagcctgggtcattttcgacgaggtccattacatg
agagacaaatcgagaggggtggtttgggaagaaacgattattttgctcccggataaagtc
cattatgtgttcctttccgctactattcccaacgctatggagtttgctgagtggatagtc
aagatccacaaccagccctgccatgtggtgtacactgacttcagacctacccccttacag
cactacttgttcccagctggcggagatggtatccatttggtcgtcgacgaaaaggggact
ttccgtgaagagaatttccaaaaggccatggccacaatcagtgacaacactggtgatgat
ccttcgtcggctgataaaggaaagggaaagaaaggacagacgtttaaaggtggtaaaggt
gatgccagttctgatatttacaaaatcgtcaagatgatctatatgaaacgatacaacccc
gtgattgtcttttctttctccaaacgtgattgtgagaaactcgccttgaaaatgtccaag
ctcgatttcaacaccgacgaagaaagagaagcattgaccaagatcttccaaaatgcaatt
aatctcctcccagaagccgacaaggacttgcctcaaatcaaaaacatcttgccgctcttg
aaacgtgggattgggatccatcattctggtcttttacctatccttaaagaaatcattgaa
atcttgttccaggaaggtttcttgaaggtgttgtttgccacagaaaccttctccattgga
ttgaacatgccggctaaaaccgtggttttcaccagtgtgagaaaatgggacggtgttgga
ttcagatgggtgtccggaggtgaatacatccaaatgtcaggacgtgctggtcgtcgtggg
ttagatgaccgaggaatcgttattatgatgatcgacgaaaagatggaaccgcaggtggcc
aagggaatggtcaagggccaagctgacagacttgactcggcgttccatttgggatacaat
atgattcttaacttgatgagagtggagggtatttctcctgaatttatgttggaaagttcg
ttctttcaattccaaaatgctgctagtgtgcctgtcatgcaaaaactgatggatgaactt
tcggtcgaacttgaacagatccaagtcgacgatgaacctactgtcaaggactactacgag
ttcaaggcgcaattgacaaagtaccaggccgatatgagaaaagttattactcaccctggc
cacatcttgccattccttcaagaaggccgtgttgtcaaggttaaagtcggcgagcatgat
tatgactgggggatggttgtgtcatttgccaaacggaatgccaagaaccaagatttcacc
ccacatgaagcctacatcgtcactgtgtttgtatgtaccatgtttgttgactcgcccgtg
aacttgatcaagtcgttcaaccccgtgttgcctgaaggtattagacctgctgttcgtgga
agtgagaaatccagggctgaatacattccaataacgttggacagtattgaaaagatcagt
tcggtgagattgcgggttccttctgatttgaagtctgctgaggccaagagaagtcttgtg
aaaaccctcaaggacttgcccaagagattaccggatggaattccattaatggatccagtg
gaaagtatgaagattaacgataacgagttcaagctactcctccgcaagattgatgtgttg
gaagccaagctcgtcagcaatccattgcacaacactgccagattagcgccactctacgag
aagtacgcttcgaaagtggagattgaaaacaagatcaagtcactcaaggagaagattctc
gaagccgaagccgtgatccagctcgacgatctccgcaacagaaagcgagtgcttcgtcgt
ctcgggttcaccaagaccgacaacgatatcattgaactcaagggccgtgttgcgtgcgaa
atcagtaccggggacgaattgctcttgacggaactcatcttcaatggtaacttcaacgag
ctcaccccggaacagtgtgctgctcttttatcgtgttttgtgttccaagaacgggccaag
gaagtgcctcgactcaaacccgagcttgcggagccattgaagtcgatgcaagaaatggcc
acgaaagtggccaaagtcagtcgtgaatgtaagattgacattattgaaaaggactatgtt
gagagtttccgagcagaattgatggaagtgacatttgcatggtgcaagggtgctacgttc
tcgcagatttgtaaaatgacggatgtgtttgaagggtcgttgattagaatgtttagaagg
ttggaagagttgattagacagttggttattgctgccaaggccattggaaattccgagttg
gaaaccaagatggaagccgctttggaattggttcatcgtgatattgttagtgcgggatcc
ttgtacttgtag
DBGET
integrated database retrieval system
