KEGG   Spathaspora passalidarum: SPAPADRAFT_58743
Entry
SPAPADRAFT_58743  CDS       T03101                                 
Name
(RefSeq) hypothetical protein
  KO
K03679  exosome complex component RRP4
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAPADRAFT_58743
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spaa03019]
    SPAPADRAFT_58743
Messenger RNA biogenesis [BR:spaa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SPAPADRAFT_58743
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     SPAPADRAFT_58743
SSDB
Motif
Pfam: RRP4_S1 ECR1_N KH_6 ECR1_N_2 RRP40_S1 DUF2110
Other DBs
NCBI-GeneID: 18872583
NCBI-ProteinID: XP_007372916
JGI: 58743
UniProt: G3AH74
LinkDB
Position
Unknown
AA seq 344 aa
MDITEVISITKPQSSSQYNNIDESNDDSDIEMGESSAGGASAGIVTPGELITEDPIWMKG
HGTYFLNDSTYSSVAGSVSRVNRLLSVIPLRGRYSPETGDHIVGRITEVANKRWKVDIGT
RQDAVLMLGSVNLPGGILRRKSESDELQMRNFLKEGDLLNCEVQTIFSNGIASLHTRSLK
YGKLRNGIFLKVPSSLIVKSKNHAYDLPGSVSVILGSNGYIWLHKTLANTSTTTTVNQNA
AKIQGRDYAPGQGSISITRLEEESSWEIYSDQNDPNITSSTRSNISRYYNVIKALAYGEL
GITEQRVILGYEASLAYSNIGSLIDRESMEQICQEVLNSEKMRG
NT seq 1035 nt   +upstreamnt  +downstreamnt
atggacataactgaagtgattagtatcaccaaaccacaatcgtcatcacaatacaacaat
atagatgagtctaacgatgattctgatatagaaatgggagaatccagtgctggcggtgct
agtgctgggatagttactcctggtgaacttattaccgaggacccaatttggatgaaaggt
catgggacttatttccttaatgattcaacatactcttctgtggctggtagtgtatctcgt
gtcaatagattattgagtgtgattccattgcgtggtagatattctccagaaaccggtgat
catattgttggtagaattactgaagtggccaataaaagatggaaagtagacatcggaact
agacaagatgctgtgttgatgcttggatccgtgaatttacctggtgggatccttagacga
aaatctgaatctgatgaattgcaaatgagaaatttcttgaaggaaggagatttgttgaat
tgtgaagttcaaactatattcagtaacggtattgcttcattacatactagatcattaaaa
tatgggaaattaagaaatggaattttcttgaaagtgccaagctcattgatcgtcaagtca
aagaaccacgcctatgacttaccaggaagtgtatctgtcatattaggtagtaatggatac
atatggcttcacaaaacattagcaaatacttccacaaccactacagtaaaccaaaatgca
gccaagatacagggaagagactatgcgccaggccaaggttctatttcaataacaaggttg
gaagaagaaagttcatgggagatctacagtgatcaaaatgatccaaatatcaccagttct
acccgtagcaatattagtcgatattataatgttatcaaggcactcgcatatggagagttg
ggaattacagaacaacgtgtgatcttagggtacgaagccagtttagcatattcaaacata
ggaagtttaattgatcgtgaatcaatggagcaaatttgtcaagaagtgttgaatagtgaa
aaaatgagaggttag

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