Spathaspora passalidarum: SPAPADRAFT_58743
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Entry
SPAPADRAFT_58743 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAPADRAFT_58743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_58743
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SPAPADRAFT_58743
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SPAPADRAFT_58743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
DUF2110
Motif
Other DBs
NCBI-GeneID:
18872583
NCBI-ProteinID:
XP_007372916
JGI:
58743
UniProt:
G3AH74
LinkDB
All DBs
Position
Unknown
AA seq
344 aa
AA seq
DB search
MDITEVISITKPQSSSQYNNIDESNDDSDIEMGESSAGGASAGIVTPGELITEDPIWMKG
HGTYFLNDSTYSSVAGSVSRVNRLLSVIPLRGRYSPETGDHIVGRITEVANKRWKVDIGT
RQDAVLMLGSVNLPGGILRRKSESDELQMRNFLKEGDLLNCEVQTIFSNGIASLHTRSLK
YGKLRNGIFLKVPSSLIVKSKNHAYDLPGSVSVILGSNGYIWLHKTLANTSTTTTVNQNA
AKIQGRDYAPGQGSISITRLEEESSWEIYSDQNDPNITSSTRSNISRYYNVIKALAYGEL
GITEQRVILGYEASLAYSNIGSLIDRESMEQICQEVLNSEKMRG
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atggacataactgaagtgattagtatcaccaaaccacaatcgtcatcacaatacaacaat
atagatgagtctaacgatgattctgatatagaaatgggagaatccagtgctggcggtgct
agtgctgggatagttactcctggtgaacttattaccgaggacccaatttggatgaaaggt
catgggacttatttccttaatgattcaacatactcttctgtggctggtagtgtatctcgt
gtcaatagattattgagtgtgattccattgcgtggtagatattctccagaaaccggtgat
catattgttggtagaattactgaagtggccaataaaagatggaaagtagacatcggaact
agacaagatgctgtgttgatgcttggatccgtgaatttacctggtgggatccttagacga
aaatctgaatctgatgaattgcaaatgagaaatttcttgaaggaaggagatttgttgaat
tgtgaagttcaaactatattcagtaacggtattgcttcattacatactagatcattaaaa
tatgggaaattaagaaatggaattttcttgaaagtgccaagctcattgatcgtcaagtca
aagaaccacgcctatgacttaccaggaagtgtatctgtcatattaggtagtaatggatac
atatggcttcacaaaacattagcaaatacttccacaaccactacagtaaaccaaaatgca
gccaagatacagggaagagactatgcgccaggccaaggttctatttcaataacaaggttg
gaagaagaaagttcatgggagatctacagtgatcaaaatgatccaaatatcaccagttct
acccgtagcaatattagtcgatattataatgttatcaaggcactcgcatatggagagttg
ggaattacagaacaacgtgtgatcttagggtacgaagccagtttagcatattcaaacata
ggaagtttaattgatcgtgaatcaatggagcaaatttgtcaagaagtgttgaatagtgaa
aaaatgagaggttag
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