Spathaspora passalidarum: SPAPADRAFT_60025
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Entry
SPAPADRAFT_60025 CDS
T03101
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03018
RNA degradation
spaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAPADRAFT_60025
09123 Folding, sorting and degradation
03018 RNA degradation
SPAPADRAFT_60025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_60025
03041 Spliceosome [BR:
spaa03041
]
SPAPADRAFT_60025
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPAPADRAFT_60025
mRNA degradation factors
5'-3' decay
Lsm complex
SPAPADRAFT_60025
Spliceosome [BR:
spaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SPAPADRAFT_60025
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Hfq
Antigen_Bd37
Motif
Other DBs
NCBI-GeneID:
18873184
NCBI-ProteinID:
XP_007374174
JGI:
60025
UniProt:
G3AJD1
LinkDB
All DBs
Position
Unknown
AA seq
77 aa
AA seq
DB search
MSEFEKTDPSKFLSDIIGSSVIVKLQNGINYTGNLQTIDGYMNVVLDNAKECSNGKVVRD
YGDVFIRGNNVLYISEA
NT seq
234 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatttgaaaagacagatccatcaaagtttttgagtgatataattggatcatct
gtgattgtgaagttgcagaacggtatcaactataccggaaatttacaaactatagatgga
tacatgaatgttgtattggacaatgccaaggaatgcagtaacggtaaagtagtgagggat
tatggtgatgtgtttatcagaggtaacaatgtgttgtatattagtgaagcataa
DBGET
integrated database retrieval system
