Spathaspora passalidarum: SPAPADRAFT_62216
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Entry
SPAPADRAFT_62216 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K12881
THO complex subunit 4
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03013
Nucleocytoplasmic transport
spaa03015
mRNA surveillance pathway
spaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAPADRAFT_62216
09122 Translation
03013 Nucleocytoplasmic transport
SPAPADRAFT_62216
03015 mRNA surveillance pathway
SPAPADRAFT_62216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_62216
03041 Spliceosome [BR:
spaa03041
]
SPAPADRAFT_62216
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SPAPADRAFT_62216
TREX complex
SPAPADRAFT_62216
Spliceosome [BR:
spaa03041
]
Complex C
Other components
EJC/TREX
SPAPADRAFT_62216
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SPAPADRAFT_62216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_3
FoP_duplication
DUF4397
RRM_PARP14_3
CAP18_C
Motif
Other DBs
NCBI-GeneID:
18874220
NCBI-ProteinID:
XP_007376385
JGI:
62216
UniProt:
G3AQR0
LinkDB
All DBs
Position
Unknown
AA seq
220 aa
AA seq
DB search
MSASLDKSLDEIISSTKKPFKGRRAGSKIGGGAKRVGKKVGGTTQKKPIVSFKKGGNAAQ
AAAAAKAFDLSYATKVNVSGLPRDLKQENIKDFFQSQVGGVHTVALSYNEKGQFKGHATV
IFKTNKSATLAIEKYNGAPIDNGSSKLRLELIVDPSKRPLATRIAPNKVGAAPKVAAAKQ
VLNKKKTDAKKQQPNKKKPAKKTKKTIEELDQEMADYFDN
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcctcattagataaatctttagatgaaatcatttcttctaccaagaagccattc
aagggaagaagagccggttctaagatcggtggtggtgccaagcgtgtgggtaagaaagtt
ggtggaactactcaaaagaaacctattgtttctttcaagaaaggtggcaatgccgctcaa
gcagcagctgctgctaaagcttttgatttgagctatgctaccaaggttaatgtatctggt
ttaccaagggatttaaaacaagaaaatatcaaggattttttccaatcacaagttggtggt
gttcacactgttgctttaagttacaatgaaaagggtcaattcaagggtcacgccactgtt
attttcaagactaacaaatctgctactttagctattgaaaaatacaatggtgccccaatt
gacaacggatcatctaaattaagattagaattaattgtcgatccaagtaaaagaccatta
gctactagaattgcaccaaataaggttggtgccgcaccaaaagttgctgctgccaagcaa
gtcttgaataagaagaagaccgatgccaagaagcaacaaccaaacaagaagaagccagct
aagaagactaagaagactatcgaagaattagaccaagaaatggctgattatttcgataac
taa
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