KEGG   Spathaspora passalidarum: SPAPADRAFT_62538
Entry
SPAPADRAFT_62538  CDS       T03101                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03013  Nucleocytoplasmic transport
spaa03015  mRNA surveillance pathway
spaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPAPADRAFT_62538
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPAPADRAFT_62538
   03015 mRNA surveillance pathway
    SPAPADRAFT_62538
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spaa03019]
    SPAPADRAFT_62538
   03041 Spliceosome [BR:spaa03041]
    SPAPADRAFT_62538
Enzymes [BR:spaa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SPAPADRAFT_62538
Messenger RNA biogenesis [BR:spaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     SPAPADRAFT_62538
Spliceosome [BR:spaa03041]
 Complex C
  Other components
   EJC/TREX
    SPAPADRAFT_62538
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SPAPADRAFT_62538
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 18874367
NCBI-ProteinID: XP_007376702
JGI: 62538
UniProt: G3ASC9
LinkDB
Position
Unknown
AA seq 439 aa
MSHEGQEELLDYSDSEEIAVPTTSATTAGNDAGAEGAANDKEADKKGSYVGIHATGFRDF
LLKPELLRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPI
PGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPIKRDIEKLKNKDTCPHI
VVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLEAIDMRRDVQDIFRATPHQKQVMMFS
ATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKLSDLLDSLEFN
QVIIFVRSTQRANELNKLLCACNFPSIAVHSGLPQEERIERYRSFKEFNKRICVSTDVFG
RGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISLVSTKEDEEVLEKIQSRFD
VKITEFPEEGVDPSTYMNT
NT seq 1320 nt   +upstreamnt  +downstreamnt
atgtctcacgaaggtcaagaagaattattggattactccgattctgaagaaatcgccgtt
ccaactacctcagctaccacggctggtaatgatgctggtgctgaaggtgctgccaacgac
aaagaagctgacaaaaagggttcttatgttggtatccatgccactgggttcagagatttc
ttattaaagcctgaattattaagagctattggtgattgtggttttgaacatccatccgaa
gtccaacaagtttgtatccctcaatctattttgggtactgatgttctttgtcaagccaag
tccggtttaggtaaaactgccgtctttgttttgtctactttacaacaattggacccaatt
ccaggagaaatttccactctagttatctgtcataccagagaattggcttaccaaattcgt
aatgaatatgccagattttccaagtatatgccagacgttaagaccgaagtcttttacggt
ggtactccaattaagagagatatcgaaaaattaaagaacaaagacacttgtcctcatatt
gttgttgccactccaggtagattgcatgctttagttcaagaaaaggccatcagattaaac
aatgttaaatcatttgttattgatgaatgtgataaagtcttggaggccattgacatgaga
cgtgatgttcaagatatctttagagccactcctcaccaaaagcaagttatgatgttttct
gctactttatcacaagaaatccgtccagtttgtaagaagtttatgcaaaatccattggaa
atttacgttgatgatgaagctaaattgactttacacggtttacaacaatattatatcaag
ttggaagaaaaggaaaagaatagaaaattatctgatttattagattctcttgaatttaac
caagttattatattcgtgagatctacccaaagagccaatgaattgaacaagttgttgtgt
gcttgtaacttcccatctattgctgttcattctggtttaccacaagaagaaagaatcgaa
agatacagatccttcaaagaattcaacaagagaatctgtgtttccactgatgtctttggt
agaggtattgatattgaaagaatcaacttggccatcaactacgatttaccaaacgaagcc
gatcaatacttgcatcgtgttggtagagctggtagatttggtaccaagggtttagctatt
tctttggttagtaccaaggaagacgaagaagttttagaaaagattcaaagtagattcgat
gtcaagattactgaattcccagaagaaggtgttgatccatctacttatatgaatacttag

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