KEGG   Spathaspora passalidarum: SPAPADRAFT_63257
Entry
SPAPADRAFT_63257  CDS       T03101                                 
Name
(RefSeq) hypothetical protein
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
spaa  Spathaspora passalidarum
Pathway
spaa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:spaa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    SPAPADRAFT_63257
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:spaa03021]
    SPAPADRAFT_63257
   03019 Messenger RNA biogenesis [BR:spaa03019]
    SPAPADRAFT_63257
Transcription machinery [BR:spaa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     SPAPADRAFT_63257
Messenger RNA biogenesis [BR:spaa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     SPAPADRAFT_63257
SSDB
Motif
Pfam: Pcf11_C Pfc11_Clp1_ID CID zf_PCFS4 zf_UBZ Ephrin_rec_like zf-C2H2_6
Other DBs
NCBI-GeneID: 18874661
NCBI-ProteinID: XP_007377378
JGI: 63257
UniProt: G3AU32
LinkDB
Position
Unknown
AA seq 542 aa
MSDILESYQQTLSELTFNSRPIIETLTTIAKENPTVADGIIDLITQRIRRAIPQHKLFAL
YLLDSICKTVGNPYNILVGYDVYNLFIDVWKVVDEATRTRLVALFETWKISKVRGGGESL
FPRDQLDKVEGFLKKVGKLTSAPTQSQSQKSQSGPVLSNSKLISDINQLIPIFEAKLKRT
NDSKLNDKFRALNQLKIILTNQQMKPQELQAVQNQLNAIKEQELSPAPPSLPPIPPKPVI
HQQHQQQQQQPPQPLQPIVNASQIFNDLILSGLVKKEQEPIPGSKPNYTLVFPTIKYVPK
TEIPGVDVLADILNPNSNIQRSEYQKLKFGELVQISKAISGDDNSLQKFINTNKPSHSSV
QLLYNSKASKCSICGKRFSTDQEGSTKKRLHLDWHFRINKKLTGTGSGATGTGGGVVSNV
QSRSWYLDDYDWANFKDEQLLEFATPEVAQTATINSNIPSGVVPYVVVPSADTNMNNKCL
ICLEQVKASYNDEIGEWCWMGCIKSPNDSKNLRKIVHITCFNDRKRATDTEDGNTRKRGK
LA
NT seq 1629 nt   +upstreamnt  +downstreamnt
atgtcagatatcctcgaatcgtaccagcaaacacttagtgagctcacattcaactcccgt
cccataatagaaacattaaccacaatagccaaggagaatcccacggtggccgatggtatc
atagacttaataacacaaagaatccgccgggcaattcctcaacataaactatttgcatta
tatttgcttgactcaatttgcaaaaccgtgggtaatccttataatattcttgtaggatat
gatgtctataatttgtttattgatgtatggaaagtggttgatgaagctacaagaactaga
ttagtggcattatttgagacttggaaaattctgaaagttagaggtggtggtgagctgttg
ttccccagagaccaattggataaagttgaagggtttttaaagaaagtggggaaacttaca
tcagcacctacacaatcacaactgcaaaagagtcaactgggtccagtgcttagtaatagt
aagttaatttctgatatcaaccaattaattccaatatttgaagctaaacttaaacgtact
aatgattctaaactcaatgataaattcagggcgttaaaccaattaaaaattatcttgact
aaccaacaaatgaaaccacaagaattacaagcagttcagaatcaacttaatgcaattaag
gaacaagaattgtcacctgcgccgccatccttacctcctatacctccaaaaccagtaatc
caccaacaacatcaacagcaacagcaacagcctccacaacctcttcaaccaatagtaaat
gccagtcaaatatttaacgaccttattctctcgggtctagtcaagaaagaacaagaacca
attccaggttcaaaacctaattatacattagtattccctactattaaatatgttcctaaa
acagaaattccaggagttgatgtgcttgccgatatccttaatcctaacagcaacattcaa
cgatctgaatatcaaaagttgaaatttggggaattggttcaaatttccaaagctatcagc
ggtgatgataacagcttacaaaaattcataaatacaaataaacctagtcattcctcagtt
caacttttgtacaattccaaagccagcaaatgttcaatttgtggtaaaagatttagtact
gatcaagaaggatccaccaagaaacgtcttcatttggattggcattttagaatcaataag
aaattaacaggtacgggttctggtgcaactggaactggtgggggcgttgtatccaacgtt
caatccagaagctggtacttggatgattacgattgggctaacttcaaagatgagcaattg
ttggaatttgctactcctgaagtggctcaaactgcaacaatcaattcgaatataccgagt
ggagttgttccatatgtggttgttccttcagccgataccaatatgaataataaatgtttg
atctgtttagaacaagtcaaggctagttataatgatgaaattggggagtggtgttggatg
ggatgtataaagagtccaaatgactccaagaacttacgaaagattgtccatattacttgt
ttcaacgatagaaagagagcaacagatactgaggatggtaatactagaaaacgaggtaaa
ttagcataa

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