Spathaspora passalidarum: SPAPADRAFT_68158
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Entry
SPAPADRAFT_68158 CDS
T03101
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAPADRAFT_68158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_68158
Enzymes [BR:
spaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SPAPADRAFT_68158
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPAPADRAFT_68158
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SPAPADRAFT_68158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
LRR_14
LRR_LRWD1
LRR_6
Motif
Other DBs
NCBI-GeneID:
18875200
NCBI-ProteinID:
XP_007376967
JGI:
68158
UniProt:
G3ATH1
LinkDB
All DBs
Position
Unknown
AA seq
817 aa
AA seq
DB search
MNVNNKYQHAAAQIQGQPQTNLQAQQILLQQLHQGQSQQQQQQQQQQQQQQQPGANALGA
GFQPNENFNDTLNQGIYQANYQRAQPSQQQLQQQFFPQFQQGQQAQGNAQQLQQPYQPQQ
LQQQQQQQYQPNQQQQQQQVPRQPPHLQQQQFYTQQQQQQQAALQAQQQVQLQQVQQQVQ
QQQQQTPVQKLSTINIDNPNSLYWQHQQQLCQLSRTSNIPHSYARQYASNSRKNKNPYNE
VKSVGLIEATKTIIASLEEQEKANNSNNQQSTPTSNTALLHNKKHSQDLDDDTMEEQRMR
LKTQGKQLWCQLDLSGQGLVNISPKLFHYDFLESLYLSNNKLTSIPPVISKLRSLRTLDL
SHNRISEIPSELGLCFNLRYLYLFDNNIKTLPNSFGNLIELLFLGIEGNPMDLSIANLLA
EKGTKELITTLRDQKITPIRTPKPRPWLLLEDDGEIADSVETFRNDTNGDSFTLLSYNTL
CQHYATPRMYKFTPSWALDWDYRRNALQREILGYNTDIICMQEVETRTFNEFWLPLMSEH
GYRGVFFCKTRAKTMSEADAKKVDGCATFFKAEKFNLVQKQNFEYNSVCMGSDKYKKTKD
LFNRFMNKDNTALITFLQHKESGEHMTIVNTHLHWDPSFNDVKTLQVGILLEEMQGIIKK
FLHTSSMEEVKNATMIVCGDFNSVKESAVYQLFSTGASVNHEDMAGRDYGKFTEEGFRNA
FKLKSAYETLGELPFTNLTPAFTDNIDYIWYSTNSLQVRGLLDKVDMDYASHRIGFPDAN
FPSDHIPILAKFQFKKGSAAKKPDFKPDFKTGPSRKT
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtgaataataaatatcaacatgccgctgctcagatccagggtcagccacagacc
aacttacaagcccagcagatcttattgcagcaactccatcaggggcaatcacaacaacaa
caacaacagcagcagcagcagcaacaacaacaacagccaggggctaatgccttaggtgcc
gggttccaaccaaatgagaactttaatgacacactaaaccaagggatatatcaagctaac
taccaaagagctcaaccatcgcaacaacaattgcagcagcagtttttcccccaattccaa
caaggacaacaagcacaaggaaatgcccaacaattacaacaaccttaccaacctcaacaa
ttgcaacaacagcaacaacaacaataccaaccaaatcaacaacaacagcaacaacaagtc
cctcgtcaacctcctcatcttcaacagcaacaattttacactcaacaacaacaacaacaa
caagcagctcttcaagcccaacaacaagtccaacttcaacaggttcagcaacaagtccaa
caacaacaacaacaaactcctgtacagaaattgtccaccatcaatatcgataacccaaac
tctctctattggcaacatcaacaacaattgtgtcaattgtcaagaacatcaaacatcccc
cattcatatgccagacaatatgcttctaattccagaaagaataagaacccttacaatgaa
gttaaatcagtaggtttgattgaagctacgaagacaatcattgccagcttagaagaacaa
gaaaaagccaacaactcaaataatcaacaaagcaccccaacttcaaatactgccttgtta
cataataagaaacattcacaagacttggatgatgataccatggaagaacaaagaatgaga
ctcaagactcaagggaagcaattgtggtgtcaattggatttgagtggtcaaggattggtt
aatatttcccctaaattattccactatgatttcttggaatccttatacttgagtaacaac
aaattaaccctgattcctccagtaatcagcaaattgagaagtttaagaacattggattta
tcacataatcgtatttcagaaattccatctgaacttgggttatgctttaatttgagatat
ctttatttgtttgacaataatattaaaaccttgcctaattcttttggaaatttgatagag
ttgttattcttggggattgaaggaaatccaatggatttaagcattgccaatttattagca
gaaaagggcaccaaagaactcatcaccacattaagagatcaaaagatcactcctattaga
actcctaaaccaagaccttggttattattggaagatgatggtgaaattgccgattcagtt
gaaacattcagaaatgataccaatggggattcattcaccttgttatcatacaataccttg
tgtcaacattatgctactccaagaatgtacaaattcactccttcatgggctttggattgg
gattacagaaggaacgcgcttcaacgagaaatcttgggatacaacaccgatattatctgt
atgcaagaagtggaaacgcgtacttttaacgaattctggctcccattaatgtctgaacat
ggatacagaggtgttttcttttgcaagactagagctaagaccatgagtgaagccgatgct
aaaaaggttgatggttgtgccactttctttaaagcagaaaagtttaatttggttcaaaag
caaaatttcgaatataatagtgtttgtatgggatcagacaagtataaaaagaccaaggat
ttgtttaatagattcatgaataaggataacactgcattgatcacattccttcaacataaa
gaaagcggagagcatatgacaattgtcaatactcatttacattgggatccttcatttaat
gatgtcaagacattgcaagttgggattttattggaagaaatgcaaggaatcatcaagaag
tttttgcatacttcgtccatggaagaagtcaaaaatgccaccatgattgtctgtggagat
ttcaattccgttaaagaaagtgcagtttatcaattattctccaccggtgcttccgttaat
catgaagacatggcgggacgggactatggtaagttcactgaagaaggattccgcaatgca
tttaaattgaaatcagcttatgaaacattgggtgagttgccatttactaatcttacgcca
gcattcacggataatattgattatatttggtactcaaccaattctttacaagttagagga
ttgttagataaagttgatatggattacgctagccaccgtatcggattccccgatgcaaat
ttcccatccgatcatattccaatattggctaaattccaatttaaaaaggggagcgcagcc
aagaaaccagactttaaaccagacttcaagactgggccttcaagaaaaacctga
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integrated database retrieval system
