Spathaspora passalidarum: SPAPADRAFT_70383
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Entry
SPAPADRAFT_70383 CDS
T03101
Name
(RefSeq) snRNA-associated protein, Sm class
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
spaa
Spathaspora passalidarum
Pathway
spaa03018
RNA degradation
spaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAPADRAFT_70383
09123 Folding, sorting and degradation
03018 RNA degradation
SPAPADRAFT_70383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spaa03019
]
SPAPADRAFT_70383
03041 Spliceosome [BR:
spaa03041
]
SPAPADRAFT_70383
Messenger RNA biogenesis [BR:
spaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPAPADRAFT_70383
mRNA degradation factors
5'-3' decay
Lsm complex
SPAPADRAFT_70383
Spliceosome [BR:
spaa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SPAPADRAFT_70383
Complex C
U2 snRNP components
SPAPADRAFT_70383
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF1461
Hfq
Gemin7
DUF150_C
Motif
Other DBs
NCBI-GeneID:
18875323
NCBI-ProteinID:
XP_007373827
JGI:
70383
UniProt:
G3AHS9
LinkDB
All DBs
Position
Unknown
AA seq
100 aa
AA seq
DB search
MLFFSFFKTLVDQEVTVELKNDMEIKGTLKSVDQYLNLKLDNISCTNGNKYPHLQSVKTL
FIRGSTVRYVHMSPNSVDCTLLQDASRRKLWFNPQSRMIV
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atgttatttttcagttttttcaagacgcttgtggatcaagaagtcacagttgaattaaag
aatgacatggaaataaaaggaaccttaaaatccgtcgatcaatacttgaatttgaaattg
gataatatatcatgcaccaatggcaacaaatacccacacttgcaatctgtcaagactcta
tttatcagaggttccactgtccgttacgtccatatgagtccaaattcagttgattgcact
ttgttacaagatgcatctagaaggaagctatggttcaatccgcaaagtaggatgattgta
taa
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