Streptococcus parasuis: KQ224_09855
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Entry
KQ224_09855 CDS
T07585
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
spab
Streptococcus parasuis
Pathway
spab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KQ224_09855 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spab03019
]
KQ224_09855 (rnr)
03016 Transfer RNA biogenesis [BR:
spab03016
]
KQ224_09855 (rnr)
Enzymes [BR:
spab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KQ224_09855 (rnr)
Messenger RNA biogenesis [BR:
spab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KQ224_09855 (rnr)
Transfer RNA biogenesis [BR:
spab03016
]
Prokaryotic type
tRNA degradation factors
KQ224_09855 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1_RRP5
RNase_II_C_S1
CSD
Motif
Other DBs
NCBI-ProteinID:
QWV86309
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All DBs
Position
1896265..1898634
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AA seq
789 aa
AA seq
DB search
MKNEIINYIKEVGPVTMEQLADQFGAGSAKSFTDLVKLVSSMEGQRKLVFDQDGRIALPA
PKVTRNRVTLQGIFHAHKSGFGFVTIDEEEDDLFVSRDNVNFAIEGDRVEIAIKKVADRL
KGTAAEAEVIDILEHSLKTAVGLIVFDEDRPEYSGYIKSKNQKIAQKIYIKKSPLVLTGT
EILKVDIEAYPNKKRDYFVATIRDVVGHKDDVGIDVLEVLESMDIVSEFPDEVLAEADRA
PESPSEKDFEGRLDLRDEIIFTIDGADAKDLDDAIHIKQLKNGNLELGVHIADVSYYVTE
GSALDQEAIKRGTSVYVTDRVVPMLPERLSNGICSLNPNVDRLTQSAIMEIDRKGKVVKH
WIGQTVIKTTFRMTYSDVNDMIAGNQEKLATYKAIVPSVELMVKLHETLEAMRYKRGALN
FDTSEAKIIVNKDGLPVDIQLRQRGIAERMIESFMLAANECVAEHFAKLDLPFIYRIHEE
PKSEKLQKFIDYATSFGLTVYGTASSISQDALQDLMERVKDEPYADVLNMMLLRSMQQAR
YSEHNHGHYGLGAEFYTHFTSPIRRYPDLLVHRMVREYGHNPAEKAEHFEQVIPELAKSS
SSLERRSIDAEREVEAMKKAEFMQEFVGQEFDGVVSSVVKFGLFVELPNTVEGLIHVTNL
NEYYQFHERTLTLQGEKSGRVFRVGQPIRIKLTRADKMTGEIDFAHVPSELDLVEKNLKS
KRKTMSHSNRDRDDRSGRGRGKNRKKEAVGRDSGRHKSGKDSKSKSGATDKKKKPFHKEV
AKKDKKKRR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacgaaattattaactatattaaagaagttgggcctgttaccatggagcaatta
gcggatcagtttggagctggttctgctaagagctttaccgatttggtcaagctagtttct
tctatggaaggtcagcggaaactggttttcgaccaagatggaagaattgctcttccagcg
cccaaggttactagaaatagagtaaccttgcagggcattttccatgcccacaagtctggt
tttggatttgtgaccattgatgaggaggaagatgatctctttgtcagtcgtgacaatgtt
aactttgctatcgagggtgacagagttgagattgcaattaaaaaggttgcagatcgtctc
aagggaactgccgcagaagcggaagtcattgatattttagaacatagcctgaaaactgcg
gtgggcttgattgtttttgatgaagacaggcccgagtattcaggctacatcaagtctaaa
aaccagaaaattgctcagaagatttacatcaagaagtcacctttggtattgaccggaacg
gaaatcctcaaagtcgacattgaagcctatccaaataagaaacgggactattttgttgcg
accattcgggatgtggtgggacataaggatgatgtagggatcgatgtcttggaagttttg
gaatccatggatatcgtgtcggaattccctgatgaagtcttggcggaggctgatcgagcg
ccagaaagtccgtctgagaaggactttgaaggccgtttggatctgcgggatgaaatcatc
ttcaccattgacggtgcggatgccaaggacttggacgatgctatccatatcaagcaactc
aagaacggcaatctggaactgggtgtccatatcgctgatgtcagctattatgtgacggaa
ggctcagccttggatcaagaggccatcaagcgtgggacttctgtctatgtgaccgaccgt
gtggtgccaatgttgccagaacgtttgtcaaatggtatttgttcccttaatccaaatgtg
gatcgcctgacccagtcggctattatggaaattgaccgtaagggcaaggtggttaagcac
tggattggccagacagttattaaaaccaccttccgcatgacctattctgatgtcaatgac
atgattgcgggaaatcaggaaaagcttgctacatacaaggcaatcgtgccaagtgttgag
ctcatggtcaaactccatgagacgctggaagccatgcgctacaagcgtggggctctgaac
tttgatacatcggaagccaaaatcatcgtcaacaaggatggtctgccagtagatattcaa
ctgcgtcaacggggtattgccgagcggatgattgagtccttcatgctggctgccaacgag
tgcgttgccgagcattttgccaagcttgaccttcctttcatctatcggatccacgaggag
cctaagtcagaaaagttacagaagttcatcgactatgcgacaagctttggcttgacggtt
tacggtacggctagctctatcagccaggatgcccttcaagatcttatggagcgggtcaag
gatgaaccctatgcggatgtcctcaacatgatgttgctgcgttccatgcagcaggcgcgc
tactcagagcacaaccacggccactacggactgggtgcagagttttatacccacttcacc
agtcctatccgccgctatcccgacctgctggttcaccgtatggtgcgggaatatggtcac
aatcctgcggaaaaagcagagcatttcgagcaggttattcctgagcttgccaagtcttcg
tccagtttagaacgccgttctatcgatgcagagcgggaagtcgaagccatgaagaaggca
gagttcatgcaagaatttgtcgggcaagagtttgatggtgtcgtgtctagcgtggtcaag
tttggtctctttgttgagttgccaaatacagttgaaggactgatccatgttaccaacctc
aacgagtactatcagttccacgagcggactctaaccttgcagggtgagaaatctggtcgt
gtcttccgtgtcggtcagccaatccgaattaagctaacgcgggcggataagatgacaggg
gaaatcgattttgcccacgtgccgtccgagctggatcttgtcgagaagaatctaaagtcg
aaacggaaaacaatgagtcattcaaaccgcgatcgtgatgatcggtcagggcgaggacgg
ggcaaaaaccgtaaaaaggaagctgttggtcgcgacagcggacgtcacaagtctggaaaa
gacagcaaatcaaagtctggagcaactgacaagaaaaagaaaccatttcataaagaagtg
gcgaaaaaggataagaagaaaaggagatag
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