Streptomyces pactum: B1H29_01035
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Entry
B1H29_01035 CDS
T07142
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spac
Streptomyces pactum
Pathway
spac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1H29_01035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spac03019
]
B1H29_01035
Messenger RNA biogenesis [BR:
spac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1H29_01035
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AQS65716
UniProt:
A0A1S6J1S9
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All DBs
Position
254076..255761
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AA seq
561 aa
AA seq
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MSHPHPELKAAPPLPDGGLRVTALGGLGEIGRNMTVFEHAGKLLIVDCGVLFPEENQPGV
DVILPDFTSIRGRLDDVVAIVLTHGHEDHIGGVPYLLRERSDIPVVGSKLTLAFIEAKLK
EHGIRPRTVLVREGDRRGFGPFDCEFVAVNHSIPDGLAVALRTGAGLVLHTGDFKMDQFP
LDDRITDLRAFARLGEEGVDLFLTDSTNAEVPGFTTSERELNPAIEQVMRTAPRRVIVSS
FASHVHRIQQVLDAAHQYGRKVAFVGRSMVRNMGIARELGYLRVPPGLVVSTKELEKLPD
HKVTLVCTGSQGEPMAALSRMANRDHMIRVGKGDTVLLASSLIPGNENAIYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELVYCYNIVKPRNVMPVHGEFRHLRANADLAIRTGVDPK
RVVVAEDGVVVDLVDGRASISGKVPAGNVYVDGMEVGGATEASLKDRLTLAEEGVVTVVA
LVDADTGALTEPPDFLARGFVHDETTFEPVIPLIEKTLATAAQEAVGDARQLEQLIARAV
ANWAFRTHRRRPLVIPVIIDA
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatccgcatccagaactcaaagccgccccgccgctgcccgacggaggactgagg
gtcaccgctctaggcggtctgggcgagatcggtcgcaacatgaccgttttcgaacatgcc
ggcaagctgctgatcgtggactgcggcgtgctgttcccggaggagaaccagcccggcgta
gacgtgatccttcccgacttcacatcgatccggggccgcctggacgatgtcgtggccatc
gtgctcactcacggccacgaggaccacatcggcggcgttccctacctgctcagggagcgt
tccgacattcccgtcgtggggtcgaagctcactctcgccttcatcgaggcgaaactgaag
gagcacggcatcaggccccgcacggttctggtacgggagggcgaccggcgcggcttcggc
cccttcgactgcgagttcgtggccgtcaatcattccattccggacgggctcgcggtcgcc
ctgcggacgggcgccggcctggtgctgcacaccggcgacttcaagatggaccagttcccc
ctggacgaccgcatcaccgacctgcgggcgttcgcgcgcctcggtgaggagggtgtcgat
ctctttctcaccgactccaccaatgccgaggtgcccgggttcaccacgtccgagcgggag
ctgaacccggcgatcgagcaggtgatgcgcaccgcgcccaggcgggtcatcgtctccagc
ttcgccagccacgtacaccgcatccagcaggtcctggacgccgcccaccagtacggccgc
aaggtggcattcgtcggccggtcgatggtccgcaacatgggcatcgcccgcgagctgggc
tacctccgcgtcccgcccggcctcgtggtcagtaccaaggagctggagaagctgccggac
cacaaggtcaccttggtctgtacaggctcccagggcgagccgatggccgcgctctcccgg
atggccaaccgcgaccacatgatccgcgtcggtaagggcgacaccgtcctgctcgccagc
tccctcatccccggcaatgagaacgccatctaccgggtgatcaacggcctcacccggtgg
ggcgccaacgtcgtccacaagggcaacgccaaggtgcacgtctccggtcacgccagcgcc
ggcgagctcgtgtactgctacaacatcgtcaagcctcgcaacgtcatgcccgtgcacggc
gagttccggcatctgcgggccaacgcggacctggcgatccgtaccggcgtggacccaaag
agggtcgtcgtcgccgaggacggtgtcgtcgtcgacctcgtcgacggccgcgcctccatc
agcggcaaagtccctgcgggcaacgtgtacgtcgatggcatggaggtcggcggcgcgacc
gaggcatccctcaaggaccgcctcaccctcgccgaggagggcgtcgtcaccgtcgtcgcc
ctcgtggacgccgacaccggcgcgctgaccgagccgcccgacttcctggcccgtggcttc
gtacacgacgagaccaccttcgagcccgtcatccccctcatcgagaagactctggccacc
gccgcgcaggaagccgtcggtgacgcacgccagctcgaacagctcatcgcccgcgccgtc
gcgaactgggcgttccgcacccaccgccgcaggcccctcgtcatccccgtcatcatcgac
gcctga
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