Streptomyces pactum: B1H29_21930
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Entry
B1H29_21930 CDS
T07142
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spac
Streptomyces pactum
Pathway
spac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1H29_21930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spac03400
]
B1H29_21930
Enzymes [BR:
spac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1H29_21930
DNA repair and recombination proteins [BR:
spac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B1H29_21930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AQS69207
UniProt:
A0A1S6JBR6
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All DBs
Position
5127191..5130724
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAISAAADGNRMHVDLVGPPAARAFSVAALARETSRPVLAVMA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLNEIVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTEDVRERARVLAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAM
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWSIADVRERARELDMM
WWSVSPFAADDALEDADTLKLGMHAPETYRGDTAKALADTKGWLADGWRTVYVTEGHGPA
ARTVEVLGGEGIAARLDNDLGTLSPSVVHVSCGSIDHGFVDRALRLAVLTETDLTGQKAA
GREGARMPARRRKTIDPLTLEADDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAK
RGQPGDRLYIPTDQLEQITKYVGGESPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHAFGSDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFGERYAQFPVNVKALSRFQTDTEAK
ATLEGLREGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIRRELLREGQVF
YIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGG
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEEDVKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACAVGEIVLQGNNIRFAPVELRESQELRLQRLYPGSVIKAGA
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacaccgccctcgcggaagcgatc
tcggcggccgcagacggcaaccgcatgcacgtcgacctggtcggccccccggcggcccgc
gccttctcggtcgccgcgctggcccgcgagacgagccgccccgtgctggcggtgatggcg
acggggcgcgaggcggaggacctggccgccgccctgcgctccctgctgcccccggagggc
gtcgtggagtacccctcctgggagaccctcccgcacgagcggctcagcccgcgcagcgac
accgtcggccgccgtctggccgtcctgcgccgcctggcccacccgcgccccgacgaccct
gagaccggcccggtctccgtcgtcgtcgcgcccgtgcgctccgtgctccagccgcaggtc
aagggcctcggcgacctcgagccggtggccctgcgcaccggccagagcgccgacctgaac
gagatcgtcgaggccctggccgccgccgcgtacgcgcgggtggagctggtcgagaagcgc
ggtgagttcgccgtccgcggcggcatcctggacgtcttcccgcccaccgaggagcacccc
ctccgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggaggtcgccgagcacggcctgtgggccccgccctgccgcgagctgctg
ctcaccgaggacgtacgggagcgcgcccgggtcctcgccgaggaccacccggagctcggc
gaactgctcggtaagatcgccgagggcatcgcggtggagggcatggagtccctcgccccc
gtcctcgtcgacgacatggaactgctgctggacgtgctgcccaagggcgccatggccatg
gtctgcgacccggagcgggtgcggacccgcgccgccgacctggtcgccacgtcgcaggag
ttcctccaggcctcctgggcggccaccgcgggcggcggcgaggcgccgatcgacgtcgac
gcggcctccctgtggtccatcgcggacgtccgggaacgcgcccgcgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacgacgcgctggaggacgccgacaccctcaaa
ctcggcatgcacgcccccgagacctaccgcggcgacaccgccaaggcactggccgacacc
aagggctggctcgccgacggctggcgcacggtctacgtcaccgagggccacggcccggcc
gcccgcaccgtcgaggtcctcggcggcgagggcatcgcggcccgcctcgacaacgacctc
ggcaccctcagcccctccgtcgtgcacgtctcctgcggctcgatcgaccacggcttcgtc
gaccgggcgctcaggctcgccgtgctcaccgagaccgacctgaccggccagaaggcagcc
ggccgcgagggcgcccggatgccggcccggcgccgcaagaccatcgacccgctcaccctg
gaggcggacgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtc
cagcgcaccgtgcagggcgccacccgcgagtacctggtcgtggagtacgcccccgccaag
cgcggccagcccggcgaccggctctacatccccaccgaccagttggagcagatcaccaag
tacgtcggcggcgagtcccccaccctgcaccgcctgggcggcgccgactggaccaagacc
aaggcacgcgccaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtacagc
gcgcggatggcggcgccggggcacgcgttcggctcggacaccccctggcagcgcgagctg
gaggacgccttcccctacgcggagacccccgaccagctcaccaccatcgccgaggtcaag
gaggacatggagaagacggtccccatggaccgcctgatctgcggcgacgtcggctacggc
aagaccgagatcgcggtccgcgccgccttcaaggccgtccaggacggcaagcaggtggcc
gtactggtgccgacgaccctgctggtgcagcagcacttcgggacgttcggcgagcgctac
gcccagttccccgtgaacgtgaaggcgctgtcccgcttccagaccgacaccgaggcgaag
gcgacgctggagggcctgcgcgagggttcggtggacatcgtcatcggcacccaccgcctg
ttctcctccgagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctcaagaagctccgcgccaacgtcgacgtgctcacc
atgtccgccacccccattccgcgcaccctggagatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcgccacccggtgctgaccttcgtcggcccctac
gagcagaagcagatcggcgccgccatccgccgcgagctgctgcgcgagggccaggtcttc
tacatccacaaccgcgtcgagtccatcgaccgcgcggcggccaagctgcgcgagatcgtc
cccgaggcgcgcatcgccaccgcccacggccagatgtcggagcaggcgctggaacaggtc
gtcgtcgacttctgggagaagaagttcgacgtgctggtctccacgaccatcgtcgagtcc
ggcatcgacatctccaatgccaacaccctcatcgtcgagcgcggcgacaacttcggcctc
agccagctccaccagctccgcggccgcgtcggccgaggccgcgagcggggctacgcgtac
ttcctctacccgccggagaaaccgctgacggagacggcgcacgagcgcctggcgaccatc
gcccagcacaccgagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgc
ggcgccggcaacctgctgggcggtgagcagtccggccacatcgccggcgtcggcttcgac
ctgtacgtgcggatggtcggcgaggcggtcgccgactaccgggcctccctggagggcggc
gtggaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcccccggcgagcggctgcggctccaggcgtaccggtccatcgcctccgcc
aacagcgaggaggacgtcaaggccgtacgcgaggagctcgtcgaccgctacggcaagttg
ccggaaccggtggagaacctgctgctggtcgcggggctgcgcatgctcgcgcgggcgtgc
gccgtcggcgagatcgtgctccagggcaacaacatccgcttcgcgccggtcgagttgcgc
gagtcccaggagctgcggctccagcggctctaccccggcagcgtcatcaaggcgggcgcc
caccaggtgctcgtaccgcgcccgaagaccgcgaaggtgggcggcaagccgctggtcggg
cgggaactgctcggctgggtgggggagttcctgacctcgatcctggggtcgtag
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