Streptomyces pactum: B1H29_24485
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Entry
B1H29_24485 CDS
T07142
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
spac
Streptomyces pactum
Pathway
spac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1H29_24485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spac03019
]
B1H29_24485
03009 Ribosome biogenesis [BR:
spac03009
]
B1H29_24485
Enzymes [BR:
spac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B1H29_24485
Messenger RNA biogenesis [BR:
spac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1H29_24485
Ribosome biogenesis [BR:
spac03009
]
Prokaryotic type
rRNA processing factors
B1H29_24485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AQS69627
UniProt:
A0A1S6JCY7
LinkDB
All DBs
Position
5720480..5724685
Genome browser
AA seq
1401 aa
AA seq
DB search
MLEPTESTESSTTSTGSEANTPSDTLPPRRRRRAASRPAGPPSGGPEASAETVAPAEVTA
ATDEVEETEEAAAEEAAAAVPEAAPEPVSAGRPRRRAVRRASAPAGTPTTAETAETVVPA
SAAAETPAVAETPAPAEAEAEDAAPRRTRRRATRSVTTPTEPVATETSDAPAKAAETPAP
AEAEAEDAAPRRTRRRATRSVSTPTEPAAVEASAAPAAETEAPEASAEAAETPAPAEAED
AAPRRTRRRATRRVAAPSSAPADAGPEVSEPAPAAETEAPQAAPETPEKTAEPVEDAAPR
RARRRSARKAATGFAAPAQSAAAASDEADAPKRPSRPAVAVFQAPVFAEPQFQTPERAAA
EAAAEAAGPEPAQAPEEAEELTEEQPAGSRRRRKRRGAAEEAAEERTTAAAKQEREQERE
QEAPEAETDADTDADESGEDHDDAEGSEEAGSRRRRRRGGRRRRRGDAADGDAGESADGD
TEDTAAEQAARADQDAADTAEQAEEDAEESEDASGEGGGSSSSRRRRRRRRRAGDGSGEA
ESSADDPERTVVKVREPRPQREKGAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPI
ITEAEFLARREAVERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQN
VLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMSGGPRRIESALKSGQSVLVQVTKDPIGH
KGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTILKKIVPEDAGVIVRTAAE
GASEDELRRDVERLQGQWEEIRKKAKSGGSSNAPTLLYGEPDMTVRVVRDIFNEDFTKVV
VSGDEAWQTIHGYVAHVAPDLADRLSKWTSEVDVFATYRIDEQLAKALDRKVWLPSGGSL
VIDRTEAMVVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDM
VLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSETCVHCNGR
GVIVHLDQPTAAAGGGGGKRRKRARAGGEQPHEHEAVAGVETGVTAEQEAEAESEVAAEV
AEPVALPAPDFSADEELYSSAAEAEAAATRGRGRRRASRRASAPAGAPKAAKGESRHAGV
PTAQDVTVEEEVERPVRREPAAEVLAEPAAVEDAVSGAPAPALTEAPAAEAPAAAEAPAA
EEAAPKGRTRRRATRKVSAPAGAPAGAEAAVLTVPETAQPEQAEQAAQVTEAPVAAEAAA
EPSGTAAESAAPARPRRRAVRKPTTSTASEEAAVMVVPSAPAEDAAEQAAAAEAPEADAA
EEAAPAKKAAARKTAKKATAKKAATKKTAAKKTTTAKKATAKKAAKTTTAKKATAKKTAS
KKTAAAAQQTSSSVTAATDEG
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaccgaccgaatccacagagtcctcgaccacttcgacgggctccgaagcgaac
acccccagcgacaccctgccgccgcgtcgtcggcgcagggccgcgtcccgcccggcggga
ccgccgtccggtggccccgaggcgtcggcggagaccgtcgcgccggccgaggtgaccgcc
gcgaccgacgaggtggaagagacggaagaggcggcggccgaagaggctgccgcagcggtg
cccgaggcggctccggagcccgtgtccgcgggtcggccgcggcgccgtgcggtgcgccgc
gcctccgcacccgcggggaccccgacgacggcggagacggccgagaccgtcgtgccggcg
tccgccgccgccgagacgccggccgtcgccgagacgcccgcgcccgccgaggccgaggcc
gaggacgcggctccgcgccgtacccgtcgtcgtgccacgcgcagcgtgaccacgcccacc
gagccggttgccaccgagacgtccgacgctcccgcgaaggccgccgagacgcccgcgccc
gccgaggccgaggccgaggacgcggctccgcgccgtacccgtcgccgtgccacgcgcagt
gtgagcacgcccaccgagccggccgccgtggaggcgtccgccgctccggcggcggagacc
gaggccccggaggcgtcggcggaggccgccgagacgcccgcgcccgccgaggccgaggac
gccgctccccgccgtacccgtcgccgtgccacgcgccgtgtggccgccccgtcctccgcg
cccgccgacgccggcccggaggtgagcgagcccgctccggcggcggagaccgaggccccg
caggcggcccccgagacgccggagaagaccgccgagcccgtcgaggacgccgctccgcgc
cgtgcgcgccgccggtccgcccgtaaggccgccaccggattcgccgcgccggcgcagagc
gccgccgcggcctccgacgaggcggacgcccccaagcgcccgtcgcgtcccgccgtcgcc
gtgttccaggcgcccgtgttcgccgagccgcagttccagacgcccgagcgggccgccgca
gaggccgccgccgaggcggccgggcccgaaccggcgcaggcgccggaggaggccgaggag
cttacggaggagcagcccgccgggtcgcgccgccgccgcaagcgccggggtgccgccgag
gaggccgccgaggagcggaccaccgccgccgcgaagcaggagcgggagcaggagcgggag
caggaggcgccggaggccgagaccgacgccgacacggacgcggacgagtccggcgaggac
cacgacgacgccgagggctccgaggaggccggttcgcgccgacgccgtcgccggggcggc
cggcgccgtcgccggggcgatgccgccgacggcgacgccggtgagtccgccgacggcgac
accgaggacaccgccgccgaacaggccgcccgggccgatcaggacgctgcggacaccgcc
gagcaggccgaggaggacgccgaggagagcgaggacgcctccggggagggcggtggctcc
agcagcagccgtcgccgtcgtcgccgtcgtcgccgtgccggggacggctccggtgaggcc
gagtcgtccgccgacgaccccgagcgcaccgtcgtcaaggtccgcgagccccggccccag
cgggaaaagggtgccgagccgtccgacgaggtgcagtccatcaagggctcgactcgcctg
gaggccaagaagcagcgccgccgggaaggccgcgagcagggtcgccggcgcgtcccgatc
atcaccgaggcggagttcctggcccgccgcgaggccgtcgagcgggtcatggtcgtccgt
cagcacggcgagcgcactcagatcggcgtcctggaggacggcgtgctcgtcgagcactac
gtcaacaaggagcaggcgacctcgtacgtcggcaacgtctacctcggcaaggtgcagaac
gtgctgccgtcgatggaggccgccttcatcgacatcggcaagggtcgcaacgccgtcctg
tacgccggtgaggtcaacttcgaggccctcggcatgtccggcgggccgcgccgcatcgag
tccgccctcaagtccggccagtcggtcctggtgcaggtcaccaaggacccgatcggccac
aagggcgcccgtctgaccagtcaggtctcgctgcccggccgctacctggtctacgtgccc
gagggctcgatgaccggcatcagccgcaagctgcccgacaccgagcggtcccggctgaag
accatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgcggag
ggcgcgagcgaggacgagctgcgccgcgacgtcgagcggctccaggggcagtgggaggag
atccggaagaaggccaagagcggcggcagttcgaacgcgcccacgctgctctacggcgag
ccggacatgaccgtccgggtcgtgcgcgacatcttcaacgaggacttcaccaaggtcgtc
gtcagcggtgacgaggcctggcagaccatccacggctacgtggcccacgtggcgccggac
ctcgccgaccggctgtccaagtggaccagcgaggtcgacgtcttcgccacgtaccggatc
gacgagcagctcgccaaggcgctggaccgcaaggtctggctgcccagcggtggttcgctg
gtgatcgaccggaccgaggcgatggtcgtcatcgacgtcaacaccggcaagttcaccggt
cagggcggcaacctcgaggagacggtcaccaggaacaacctggaggcggccgaggagatc
gtgcgccagctcaggctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatg
gtcctggagtccaaccgggacctggtgctgcggcgcctgctggagtgcctgggccgggac
cgtacgaagcaccaggtcgccgaggtgacctcgctggggctcgtgcagatgacgcggaag
cgggtcgggcaggggctgctggagtcgttctccgagacctgcgtccactgcaacggccgt
ggcgtcatcgtccacctggaccagccgaccgccgccgccggcggcggcggtggcaagcgc
cgcaagcgggcgcgggccggcggtgagcagccgcacgagcacgaggccgtggccggtgtc
gagaccggtgtgaccgcggagcaggaggcggaggccgagtccgaggtcgccgccgaggtg
gccgagccggtcgccctcccggcgcccgacttcagcgcggacgaggagctgtacagcagc
gccgccgaggccgaggcggccgccacgcgcggtcgcggacggcgccgtgcgagccggcgg
gcgtcggccccggcgggtgccccgaaggccgccaagggcgagtcccggcacgccggggtc
ccgaccgcgcaggacgtcacggtcgaggaggaggtcgagcgtccggtgcggcgggagccc
gccgccgaggtgctggccgagcccgccgccgtcgaggacgccgtctccggcgccccggcc
ccggcactcacggaggcaccggccgccgaggcaccggccgccgccgaggcaccggccgcc
gaggaggccgcgcccaagggccgtacgcgccgtcgggccacccggaaggtgtccgcaccg
gccggtgcgcccgcgggcgccgaggccgccgtgctgacggtcccggagaccgctcagccg
gagcaggccgagcaggccgcgcaggtgacggaggcccccgtggccgccgaggccgccgcg
gagccgtccggtacggccgccgagtccgccgccccggcccgtccgcggcgccgggccgtg
cgcaagcccaccacgtccaccgcgtccgaggaggcggccgtcatggtcgtcccgtcggcc
ccggcggaggacgcggccgagcaggccgcggccgcggaggcacccgaggcggacgccgcc
gaggaggccgccccggccaagaaggcggcggcccgcaagacggccaagaaggcgacggcg
aagaaggccgccaccaagaagaccgcggccaagaagacgacgaccgcgaagaaggccacg
gccaagaaggcggccaagacgacgaccgccaagaaggccacggccaagaagacggcgtcg
aagaagaccgcggcggctgcccagcagacgtcgtcctcggtcacggccgccaccgacgag
ggctga
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