Streptomyces paludis: DVK44_05890
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Entry
DVK44_05890 CDS
T06964
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
spad
Streptomyces paludis
Brite
KEGG Orthology (KO) [BR:
spad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spad03019
]
DVK44_05890 (hrpB)
Enzymes [BR:
spad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DVK44_05890 (hrpB)
Messenger RNA biogenesis [BR:
spad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DVK44_05890 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
AAA_25
HA2_N
AAA_11
ResIII
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
AXG82390
UniProt:
A0A345I0B6
LinkDB
All DBs
Position
1352151..1354679
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AA seq
842 aa
AA seq
DB search
MIRHDVLAALPVRTAVPALERALEEHGCAVLCAPPGTGKTTLVPLVLAGLLGPSDRPVRR
VIVAEPRRIAARAAARRMAWLLGERAGERVGFTVRGERVVGRATVVEVVTTGVLLQRLQR
DPELAGVDAVILDECHERHLDADTVAAFLLDVRATLRPGLRLVAASATTDAAGWARLLDD
APVVVTDGVSYPVETVWAPPAAPVRPPHGMRVDPALLTHVASVVRRALAERDGDVLCFLP
GVGEIGRVAGQLAEVSAEVLQVHGRAPAAVQDAVLAGSVDGRRRVVLATAVAESSLTVPG
VRIVVDAGLAREPRTDHARGLSALTTVRVSQAGAGQRAGRAGREAPGTVYRCWSRGEDDR
LVRFPSPEIKVADLASFALQAACWGDPSAAGLALLDPPPAGALAAARSVLAAIGAVDTDG
RVTARGTRMAGIGLHPRLARALLDGAPEVGARRAAEVVALLSEEPPRSYGDDLAAAWRAA
RRGGDAYAARWRQEVRRLTSAVTGGGAGTGAEGPGAGSDDAAAGLIAALAFPERVARARG
AGAYLMVSGTGAEAADGSGLRGAPWLAVAVADRPATAVSARIRLAAVIDEDTARSAAGRL
RVAGEEVRWEDGDVVARRVERLGAVELAARALKSPAPELVRAALLDGLRREGPELLRWTR
EARELRERLGFLHRELGGGWPDVSDAALLERPDAWLEPELSRARRRADLGRLDAGQALRR
LLPWASGEAARLDELAPERIEVPSGSRVRVEYGGPQPVLAVKLQELFGLRETPRVAGDAG
VPVLVHLLSPAGRPAAVTADLASFWQDGYRAVRAELRGRYPRHPWPEDPSTAVATRRLNN
RR
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgccatgacgtcctcgccgccctccccgtacgcaccgccgtccccgcgctggag
cgggccctcgaagagcacgggtgcgcggtgctgtgcgcgccgcccgggacgggcaagacg
acgctcgtaccgctcgtgctcgccgggctcctcggcccgtcggaccgtcccgtacggcgc
gtgatcgtcgccgagccgcgccggatcgcggcgcgcgcggcggcccgccggatggcctgg
ctgctcggcgagcgcgccggggagcgcgtcggcttcaccgtgcgcggggagcgcgtcgta
gggcgcgcgacggtggtggaggtggtgaccaccggtgtgctgctccagcgcctccagcgc
gacccggagctggccggggtcgacgccgtcatcctcgacgagtgccacgagcggcacctc
gacgccgacaccgtcgcggccttcctgctggacgtccgcgcgacgctgcggcccggactg
cggctcgtcgccgcgtccgcgaccaccgacgcggcgggctgggcccggctgctggacgac
gcgcccgtcgtggtgacggacggcgtgtcgtacccggtcgagacggtgtgggcgcccccg
gccgcgcccgtacgcccgccgcacggcatgcgggtggatccggcgctgctgacgcatgtg
gcgtcggtcgtacggcgggcgctggccgagcgcgacggcgatgtgctctgcttcctgccc
ggcgtcggcgagatcggccgggtcgccgggcagctggcggaggtgtccgccgaggtgctc
caggtgcacggccgggcgcccgccgccgtgcaggacgcggtgctcgccgggtcggtggac
ggccgccgccgggtggtgctggccacggccgtggcggagtcgagcctgacggtgcccggc
gtacggatcgtggtggacgcgggcctggcccgggagccccgtaccgaccacgcgcgcgga
ctgagcgccctgacgaccgtacgggtgtcccaggcgggcgccgggcagcgcgccggacgg
gccggccgtgaggcgcccgggaccgtgtaccgctgctggtcgcgcggggaggacgaccgg
ctggtccgcttcccctcccccgagatcaaggtcgcggatctggcctcgttcgcgctccag
gcggcctgctggggcgatccctcggcggcggggctcgccctgctcgacccgcccccggca
ggcgcgctggccgccgcgcgctccgtactggcggcgatcggcgcggtggacacggacggg
cgggtgaccgcgcgcggcacgcggatggccggcatcgggctgcacccccggctcgcgcgg
gcgctgctggacggcgcgcccgaggtcggggcgcggcgggcggccgaggtggtggcgctg
ctgagcgaggagccgccgaggtcgtacggggacgatctggcggcggcgtggcgcgcggcc
cggcgcggcggggacgcgtacgcggcgcgctggcgccaggaggtacggcggctgacctcg
gcggtgacgggcggcggggccggcaccggtgcggaaggaccgggggcgggatccgacgac
gcggcggccgggctgatcgccgcgctcgccttccccgagcgggtggcgcgggcgcgcggc
gcgggcgcgtatctgatggtgtcgggcacgggcgcggaggcggccgacggctccgggctg
cgcggcgcgccctggctggcggtggcggtggccgaccggccggccaccgccgtgtcggcg
cggatccggctcgcggcggtcatcgacgaggacaccgcgcggtcggcggccggccggctg
cgggtggcgggcgaggaggtccgctgggaggacggcgatgtggtggcccggcgggtggag
cggctgggcgcggtcgaactcgccgcccgcgccctgaagtcgcccgctccggagctggtg
cgggcggccctgctggacgggctgcggcgcgagggtcctgagctgctgcgctggacgcgg
gaggcgcgggagctgcgcgagcggctcggcttcctccaccgggagctgggcggcggctgg
ccggatgtgtcggacgccgcgctgctggagcgcccggacgcctggctggagccggagctg
tcgcgggcccggcgccgcgcggatctgggccggctggacgcggggcaggcgctgcggcgg
ctgctgccctgggcgtccggggaggcggcgcggctggacgagctggctccggagcggatc
gaggtgcccagcgggtcccgggtgcgggtggagtacggcgggccgcagcccgtgctggcg
gtgaagctccaggagctgttcgggctgcgggagaccccgcgggtggcgggcgacgcgggg
gtgccggtgctggtgcatctgctgtccccggccgggcgtccggcggcggtgacggccgat
ctggcgtcgttctggcaggacggctaccgggccgtacgggcggagctgcgcggccgttac
ccccgccatccgtggccggaggacccgtcgaccgcggtggccacgcgccggctgaacaac
cggcgctga
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