Streptomyces paludis: DVK44_12115
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Entry
DVK44_12115 CDS
T06964
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spad
Streptomyces paludis
Pathway
spad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DVK44_12115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spad03021
]
DVK44_12115
03400 DNA repair and recombination proteins [BR:
spad03400
]
DVK44_12115
Enzymes [BR:
spad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DVK44_12115
Transcription machinery [BR:
spad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DVK44_12115
DNA repair and recombination proteins [BR:
spad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DVK44_12115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
AXG78333
UniProt:
A0A345HNQ9
LinkDB
All DBs
Position
complement(2780693..2784604)
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRTWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQVENRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWSRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEERKVIGE
GRSFGSTAEATMAFDNRELSLQAKVDIRFPVGTIPPRGWTPPAAEDDTDGTAVAWQPGDP
FRFRTTLGRALFNELLPEDYPFVDDSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGF
FWATRSGVTVAISDVVVPEAKKAIVQGYEAQDEKVQKQYERGLITKDERTQELIAIWTKA
TNEVAEAMNANFPKTNPIFMMVNSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFR
EGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLKLRI
AERGADGVLRKAEDVETSVYARMLAEDVVVDGKVIAPANVDLGDVLIDAVVAAGVEEVKT
RSVLTCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAG
DDITQGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKLVVTPDDGSEETAFPISK
RARLLVGEGDAVQVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKH
IEIIIRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKA
SLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVE
PTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cggacctggtcgcacggcgaagtgaagaagccggagaccatcaactaccgcacgctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgtggtgtc
gaagtcacccgcgccaaggtgcgccgtgagcggatgggccacattgagctggccgcgccc
gtcacccacatctggtacttcaagggtgtcccgtcacgcctcgggtacctgctggacctc
gcgccgaaggacctcgaaaaggtcatctacttcgccgcgtacatgatcacgttcgtggac
gaggagcgccggacgcgcgacctgccctcgctggaggcgcatgtctccgtcgagcgccag
caggtcgagaaccgccgtgactcggacctcgaagcccgcgccaagaagcttgagaccgac
ctggccgagctggaggccgagggcgccaaggccgatgtgcgccgcaaggtgcgcgaaggc
gccgagcgcgagatgaagcagctgcgcgaccgcgcgcagcgcgagatcgaccgtctcgac
gaggtgtggagccgcttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgcgaccgcttcggcacgtacttcgacggttcgatgggcgccgccgcg
ctccagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctccagaccagcaacagccccaagggcatggtgctggactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgtgtgatcaaccggaacaaccgcctcaagcgtctccttgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcggatgctccaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggtcgcccggtgaccggtcccggcaaccgtcccctgaag
tccctgagcgacatgctcaagggcaagcagggccggttccgtcagaacctcctcggcaag
cgcgtcgactactcggcccgttccgtgatcgtcgtcggcccgcagctcaagctgcaccag
tgcggtctgccgaaggcgatggcgctggagctgttcaagccgttcgtgatgaagcgcctg
gtggacctgaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcggccgt
acggtcgtgtacgacgtcctcgaagaggtcatcgccgagcaccctgtactgctgaaccgt
gcgcccacgctgcaccgactgggcatccaggcgttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggccgtcccgtcaccatgccgacccaggac
atggtgctcggcctcttcttcctcaccacggacgaggaggagcgcaaggtcatcggcgag
ggccggtccttcggctcgaccgccgaggcgaccatggcgttcgacaaccgggagctgtcg
ctccaggcgaaggtcgacatccgcttcccggtgggcaccatcccgccgcgcggctggacc
ccgccggccgccgaggacgacaccgacggcaccgccgtcgcgtggcagccgggcgacccg
ttccggttccggaccaccctgggccgcgcgctcttcaacgagctgctgcccgaggactac
ccgttcgtcgacgactcggtcggcaagaagcagctctccgagatcgtcaacgacctcgcc
gagcgctaccccaaggtcatcgtggcggcgacgctcgacaacctgaaggcggccggcttc
ttctgggcgacccgctccggtgtcaccgtcgccatctccgatgtcgtcgtgcccgaggcg
aagaaggccatcgtccagggctacgaggcgcaggacgagaaggtccagaagcagtacgag
cgcggtctgatcaccaaggacgagcgcacgcaggaactcatcgcgatctggacgaaggcg
accaacgaggtcgccgaggcgatgaacgcgaacttcccgaagaccaaccccatcttcatg
atggtcaactcgggtgctcgcggaaacatgatgcagatgcgtcagatcgccggtatgcgt
ggtctggtgtccaacgccaagaacgagacgatcccgcgtcccatcaaggcgtccttccgt
gaaggtctgtccgtgctggagtacttcatctccacccacggtgcccgtaagggtctggcc
gacaccgccctgcgtaccgccgactcgggttacctcacccgtcgtctggtggacgtctcg
caggacgtcatcatccgcgaggaggactgcggcaccgaccgcggtctgaagctgcggatc
gccgagcgcggcgccgatggtgtgctgcgcaaggcggaggacgtcgagacgtccgtgtac
gcgcggatgctcgccgaggacgtcgtcgtcgacggcaaggtcatcgcgccggccaatgtc
gacctgggcgatgtcctgatcgacgccgtcgtggccgccggggtcgaggaggtcaagacc
cgctcggtcctgacctgcgagtccgcggtcggtacctgcgccttctgctacggccgctcg
ctggccaccggcaagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtcc
atcggtgagcccggcacgcagctcacgatgcgtaccttccacaccggtggtgtggccggt
gacgacatcacccagggtctgccccgagtggtcgagctgttcgaggcccgtacgcccaag
ggtgtcgccccgatctcggaggcggccggccgcgtccgtatcgaggagaccgagaagacc
aagaagctggtcgtcaccccggacgacggcagcgaggagacggcgttcccgatctccaag
cgcgcccgtctgctggtcggcgagggcgacgcggtccaggtgggccagaagctcaccgtc
ggtgccaccaacccgcacgacgtgctgcggatcctcggtcagcgcgcggtccaggtccac
ctggtcggcgaggtccagaaggtctacaactcgcagggtgtgtcgatccacgacaagcac
atcgagatcatcatccggcagatgctgcgccgggtgacgatcatcgagtccggcgacgcg
gagctgctgccgggcgagctggtggagcgctcgaagttcgagaccgagaaccgtcgtgtg
gtcacggaaggcggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcg
tcgctggccaccgagtcgtggctgtcggcggcgtccttccaggagacgaccagggttctg
accgacgcggcgatcaacgccaagtcggactccctgatcggcctcaaggagaacgtcatc
attggtaagctcatcccggccggtacgggtctgtcccgctaccgcaacatccgggtggag
ccgaccgaggaggccaaggccgcgatgtactcggccgtcggctacgacgacatcgactac
tcgccgttcggcacgggctccggccaggccgtcccgctggaggactacgactacggtccg
tacaaccagtaa
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