Streptomyces paludis: DVK44_21055
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Entry
DVK44_21055 CDS
T06964
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spad
Streptomyces paludis
Pathway
spad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVK44_21055 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spad03400
]
DVK44_21055 (mfd)
Enzymes [BR:
spad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVK44_21055 (mfd)
DNA repair and recombination proteins [BR:
spad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DVK44_21055 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXG79728
UniProt:
A0A345HSQ4
LinkDB
All DBs
Position
4733638..4737180
Genome browser
AA seq
1180 aa
AA seq
DB search
MSLHGLLDAVVRDPALAEAVKAASDGHRPHVDLVGPAAARPFAVAALAREAGRPVLAVTA
TGREAEDLAAALRSLLDPDTVVEYPSWETLPHERLSPRSDTVGRRIAVLRRLAHPAKDDP
SAGPISVVVSPVRSVLQPQVKGLGDLEPVALRSGSSADLNAVTEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTADVRERAAALAEVHPELGELLGKIAEGIAVEGMEALAPVLVDDMELLLDVLPPGAMTL
VCDPERVRRRAADLVATSQEFLQASWAASAGGGEAPIDVGAASLWSIADVRDRARELGMA
WWSVSPFAVDEEIDDDAITLGMHAPESYRGDTARALADTKQWLADGWRTVFVTEGHGTAA
RTVEVLSGEGIPARLDSPAGQGGLAEIAPSLVHVARGAIDHGFVDPGLKLAVLTETDLSG
QKAAGKDGARLPAKRRKTIDPLTLEPGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEY
APAKRGQPGDRLYIPTDQLEQVTKYVGGEAPTMHRLGGADWTKTKARAKKAVKEIAADLI
KLYSARMAAPGHAFGPDTPWQRELEDAFPYVETPDQLSTIAEVKEDMEKTVPMDRLICGD
VGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVSVRALSRFQSD
AEAKATLEGLRDGAVDIVIGTHRLFSSETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANV
DVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIRRELLRE
GQVFYIHNRVESIDRAAAKLREIVPEARIATAHGQMSEGALEKVVVDFWEKKFDVLVSTT
IVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYSYFLYPPEKPLTETAHER
LATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAA
VDGGEPEEAPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIAAANTEADITAVREELTDR
YGKLPEPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLHPRTVI
KPAAHQILVPRPTAGKIGGKPVVGRELLAWTGEFLTTILS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggacgccgtggtacgtgacccggcgctcgccgaagcggtg
aaggccgcctccgacggtcaccgcccccatgtcgacctggtcggaccggccgccgcgcgg
cccttcgccgtcgccgcgctcgcgcgcgaggccgggcggccggtgctggccgtgacggcg
accgggcgggaggccgaggacctggcggcggcgctgcgctcgctgctggatccggacacc
gtcgtcgagtacccgtcgtgggagacgctgccgcacgagcggctctcgccccgctccgac
accgtcggccggcggatcgccgtgctgcgccggctcgcgcatccggcgaaggacgatccg
agcgccgggcccatcagcgtggtcgtctcgcccgtacggtccgtgctccagccgcaggtc
aaggggctcggcgacctggagccggtcgcgctgcgcagcgggtcgagcgccgatctgaac
gcggtgaccgaagcgctggccgccgccgcgtacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcgggatcctggatgtcttcccgcccaccgaggagcacccc
ctgcgggtggagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggtctgtgggcgccgccctgccgggagctgctg
ctgacggccgatgtacgggagcgggcggcggccctcgccgaggtccacccggagctgggc
gagctgctcggcaagatcgcggaggggatcgcggtcgagggcatggaggcgctcgcgccc
gtactggtcgatgacatggagctgctgctcgatgtgctgccgccgggcgcgatgacactg
gtctgcgaccccgagcgggtccggcggcgggccgccgacctcgtcgcgaccagccaggag
ttccttcaggcgtcgtgggcggcgagcgcgggcggcggagaggccccgatcgacgtcggc
gcggcctcgctctggtccatcgcggacgtacgggaccgggcgcgcgagctggggatggcc
tggtggtccgtctcgccgttcgccgtggacgaagagatcgacgacgacgcgatcacgctc
ggcatgcacgcccccgagtcgtaccggggggacaccgcccgcgcgctcgccgatacgaaa
cagtggctcgcggacggctggcgcacggtcttcgtcacggagggtcacggaacggcggcc
cgtacggtcgaggtgctcagcggggagggcatcccggcgcgcctcgacagtcccgccggt
cagggcgggctcgcggagatcgcgccgtccctcgtgcatgtcgcgcgcggcgcgatcgac
cacggcttcgtggacccggggctcaagctggccgtcctcaccgagaccgacctctccggg
cagaaggccgccggcaaggacggcgcgcgcctgcccgccaagcgccgcaagaccatcgac
ccgctcaccctggagcccggcgactacatcgtccacgaacagcacggcgtcggccggtac
gtggagatggtgcagcgtacggtccagggcgcgacgcgcgagtatctgctcgtggagtac
gcgccggccaagcgcggccagcccggcgaccgcctctacatccccaccgaccagctcgaa
caggtcaccaagtacgtcggcggcgaggcgcccaccatgcaccgcctcggcggcgccgac
tggacgaagaccaaggcgcgcgccaagaaggccgtcaaggagatcgccgccgacctgatc
aagctctactcggcgcggatggcggcccccgggcacgccttcgggcccgacacgccgtgg
cagcgggagctggaggacgcgttcccgtacgtggagacgcccgaccagctctccaccatc
gccgaggtcaaggaggacatggagaagacggtcccgatggaccggctgatctgcggcgac
gtcggttacggcaagacggagatcgcggtgcgggccgcgttcaaggcggtccaggacggc
aagcaggtcgccgtcctcgtaccgacgaccctgctcgtccagcagcacttcggcaccttc
tcggagcggtacgcgcagttcccggtgtcggtacgggcgctctcgcgcttccagtccgac
gcggaggcgaaggcgacgctggaggggctgcgggacggcgcggtcgacatcgtcatcggc
acgcaccggctcttctcgtccgagaccaggttcaaggacctgggcctggtcatcgtggac
gaggagcagcgcttcggcgtcgagcacaaggagcagctcaagaagctccgggccaatgtc
gacgtcctgacgatgtccgcgacccccatcccgcgtacgttggagatggccgtcaccggc
atccgcgagatgtcgacgatcaccaccccgccggaggagcgccacccggtgctgaccttc
gtcgggccgtacgagcagaagcagatcggcgcggcgatccggcgcgaactgctgcgcgag
ggccaggtcttctacatccacaaccgcgtcgagtcgatcgaccgggccgccgccaagctc
cgcgagatcgtgccggaggcgcggatcgcgacggcgcacgggcagatgtcggaaggcgcg
ctggagaaggtcgtggtcgacttctgggagaagaagttcgatgtgctggtctccacgacg
atcgtggagtccggcatcgacatctccaacgccaacacgctcatcgtggagcgcggcgac
aacttcggcctctcgcaactccaccagctgcgcggacgcgtgggccgcggccgggaccgc
gggtactcgtacttcctgtacccgccggagaagccgctgaccgagaccgcgcacgagcgc
ctcgcgaccatcgcgcagcacaccgagatgggcgcggggatgtatgtcgcgatgaaggac
ctggagatccgcggcgccggcaatctgctgggcggcgagcagtccgggcatatcgcgggc
gtcggcttcgatctgtacgtacggatggtgggcgaggcggtcgcggactaccgggcggcg
gtggacggcggggagcccgaggaggcgcccctcgaagtcaagatcgagctgccggtcgac
gcgcatgtcccgcacgactacgcgccgggcgagcgcctgcgcctccaggcgtaccgggcg
atcgccgcggcgaacacggaggccgacatcacggccgtacgcgaggagctgaccgaccgc
tacggcaagctgccggagccggtggagaacctgctgctggtggccgggctgcggatgctg
gcgcgggcgtgcggggtcggcgagatcgtgctccagggcccgaacatccgcttcgcgccg
gtggagttgcgcgagtcgcaggagctgcggctgaagcggctgcatccccgtacggtcatc
aagccggcggcgcaccagatcctggtgccgcgcccgacggcggggaagatcggcggaaag
ccggtggtggggcgggagttgctggcgtggacgggcgagttcctgacgacgatcctgagt
tga
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