Streptomyces paludis: DVK44_23475
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Entry
DVK44_23475 CDS
T06964
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
spad
Streptomyces paludis
Pathway
spad03420
Nucleotide excision repair
spad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
spad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DVK44_23475
03430 Mismatch repair
DVK44_23475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spad03400
]
DVK44_23475
Enzymes [BR:
spad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DVK44_23475
DNA repair and recombination proteins [BR:
spad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DVK44_23475
MMR (mismatch excision repair)
Other MMR factors
DVK44_23475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXG80135
UniProt:
A0A345HTW1
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All DBs
Position
5308483..5312118
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AA seq
1211 aa
AA seq
DB search
MSVPRLTDPERLKELLGIPFTPEQMACVTAPPAPQVIVAGAGSGKTTVMAARVVWLVGSG
QVAPEQVLGLTFTNKAAGELAERVRKALVRAGVTDPDAADPDHPPGEPRISTYHAFAGRL
LTDHGLRIGLEPSTRLLADATRFQLAARVLRDAPGPYPALTKTLPALVSDLLALDAELAE
HLVRPADLAAYDTGLLASLDGVRLSNADLRKLPETATARRELLELVGRYREAKRARDLLD
FGDQIALSAELATTRPEVGTLLRDEFRVVLLDEYQDTSVAQRLLLSGLFGGGTGHAVTAV
GDPCQAIYGWRGASVANLDDFPAHFPGADGTPAARFSLSENRRSGGRLLDLANSLAAPLR
ALHEGVEALRPAPGAERDGGVRCALLPTHAAEIDWLADSIAHLVRTGKAPGEIAVLCRTA
GDFPEIQGALVARDVPVEVVGLSGLLHLPEVADLVAMCEVLQDPGANASLVRLLTGPRWS
IGPRDLALLGRRARLLVHRGSGAGADDDLAARLAAAVEGTDPAEVVSLADALDTFLDSAG
APEDGLPFSAAARVRFARLAAELRELRRSLADPLMDVLHRVLATTGLDVELSASPHALAA
RRRETLGNFLDIAASFAALDGEAGLLAFLAFLRTAAQYEKGLDNALPGGENTVKVLTAHK
SKGLEWDVVAVPGLVAGQFPNSKAREAWTFQPKVLPHPLRGDAPTLPEVPSWDAKGIKSF
KEAMKAHQHTEELRLGYVTFTRPRSLLLGSGHWWGPNQKRPRGPSDFLHALYDHCAAGHG
EIEAWADAPEESDQNPALEAETTPRPWPLPLDGPSLLRRHRAADTVLAHLDALRADALLG
DALLGAGDGPAPVPEPEVPDEGDLWGDQFPPEDPDPEDGPYAPDDDAWESARPAAVAAAV
PAPRPPAAAPPSGDEPLPLTPEETRTLASWDRDLDALAGELRRARATVRDVLVPPSLSAT
DLLRLAEDPDGFARELARPMPRPPRPAAARRGTRFHAWVESRFEETPLPMLGPDELPGGP
EDEPEIIDERDLAALKDAFERTPYARRVPYRVETPFHLSLAGRLVRGRIDAVYREPAPAS
VTGAGTGAGAHAGTHAGAGTGPHPRPHPYTYEIVDWKTGRTRTADPLQLAVYRLAWAEQL
GIPLTAVTAAFVYIRSGEVVRPERLPGRPELERLLTHDTRATDGTGGDESHDTATDERTS
HPADETARRAR
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtacctcgcctcaccgaccccgagcggctcaaggagctgctcgggatccccttc
accccggagcagatggcctgcgtcaccgcgccgcccgccccgcaggtgatcgtggccggt
gccgggtcggggaagacgacggtgatggccgcgcgggtggtgtggctggtggggagcggg
caggtcgcgcccgagcaggtgctcgggctgacgttcaccaacaaggcggccggcgagctg
gccgagcgcgtccgcaaggcgctcgtcagggcgggcgtcaccgaccccgacgccgccgac
ccggaccaccccccgggcgagccccgtatctccacgtaccacgccttcgcgggccgcctc
ctcaccgaccacgggctacggatcgggctggagccgtccacccggctgctcgccgacgcc
acccgcttccagctcgccgcgcgcgtgctgcgcgacgccccgggaccgtaccccgcgctg
accaagacgctgcccgcgctggtcagcgacctgctcgcgctcgacgccgagctggccgag
catctcgtacggccggccgacctcgccgcgtacgacaccggactgctcgcgtccctggac
ggcgtccggctctccaacgccgatctgcgcaagctccccgagaccgccaccgcccgccgc
gagctgctcgaactcgtcgggcgctaccgcgaggccaagcgcgcccgcgacctgctcgac
ttcggtgaccagatcgccctctccgccgaactcgccaccacccgccccgaggtcggcacc
ctcctcagggacgagttccgcgtcgtcctcctcgacgagtaccaggacacctccgtcgcc
cagcgcctgctgctctccggcctcttcggcggcggtacgggccacgccgtgaccgccgtg
ggcgacccctgccaggccatctacggctggcgcggcgcctccgtcgccaacctcgacgac
ttccccgcccacttcccgggcgccgacggcacccccgccgcccggttctccctcagcgag
aaccgccgcagcggcggccggctcctcgacctcgccaacagcctcgccgccccgctgcgc
gccctgcacgaaggcgtcgaggcgctgcggcccgcgcccggcgccgagcgcgacggcggc
gtgcgctgcgccctgctgcccacccacgcggcggagatcgactggctcgcggactccatc
gcgcacctcgtgcggaccggcaaggcgcccggcgagatcgccgtcctgtgccgtacggcc
ggcgacttcccggagatccagggcgcgctggtcgcccgcgacgtgcccgtcgaggtcgtc
gggctctccgggctgctccacctccccgaggtcgccgacctcgtcgcgatgtgcgaagtc
ctccaggaccccggcgccaacgcctcgctcgtccggctgctcaccggcccccgctggtcc
atcggcccccgcgacctggcgctcctcggccgccgggcccggctgctggtccaccgggga
tccggcgccggcgcggacgacgacctcgccgcccggctcgccgccgccgtcgagggcacc
gaccccgccgaggtcgtctccctcgccgacgcgctcgacaccttcctggactcggcgggc
gcccccgaggacgggctgcccttctccgccgccgcccgggtccgcttcgcccggctcgcc
gccgagctgcgcgagctgcgccgctccctcgccgatcccctgatggacgtcctgcaccgg
gtcctggccaccaccggcctcgacgtcgaactctccgcgtccccgcacgccctggccgcc
cgccgccgcgagaccctcggcaacttcctcgacatcgcggcctccttcgccgcgctcgac
ggcgaggccgggctgctggccttcctggcgttcctccgtaccgccgcccagtacgagaag
ggcctggacaacgcgctgcccggcggcgagaacaccgtgaaggtgctcaccgcccacaag
tccaaaggactggagtgggatgtcgtcgccgtaccgggactcgtcgccggacagttcccc
aacagcaaggcccgcgaggcgtggaccttccagccgaaggtcctgccgcacccgctgcgc
ggcgacgccccgacgctccccgaggtgccctcctgggacgcgaagggcatcaagtccttc
aaggaggccatgaaggcgcaccagcacaccgaggagctgcgcctcggctatgtcaccttc
acccggccgcgctccctgctgctcggctccggccactggtgggggcccaaccagaagcga
ccccggggcccgtcggactttctgcacgccctgtacgaccactgcgcggccggccacggc
gagatcgaggcgtgggcggacgccccggaggagtccgaccagaacccggccctggaggcg
gagaccaccccgcgcccctggccgctgccgctcgacggaccgtccctgctgcgccgccac
cgggcggcggacacggtcctggcacacctcgacgcgctccgggcggacgcgcttctgggg
gatgcgctcctgggggcgggggacgggcccgcgcccgtaccggaacctgaggttccggac
gagggggacctctggggcgaccagttccccccggaggacccggaccccgaggacggccct
tacgcacccgacgacgacgcctgggagtccgcccggccggcggcggtggcggcggccgtc
cccgccccgcgcccgccggccgccgcgccgccctccggcgacgagccgctccccctcacc
ccggaggagacccgcaccctcgcttcctgggaccgcgatctcgacgccctcgcaggcgag
ctgcggcgcgcccgcgccaccgtccgcgatgtcctcgtaccgccgtccctctccgccacc
gacctgctgcggctggccgaggaccccgacggcttcgcccgggagctggcccggcccatg
ccgcgcccgccccggccggccgccgcccgccggggcacccgcttccacgcctgggtggag
tcccggttcgaggagacacccctcccgatgctcgggcccgacgaactgcccggcggcccc
gaggacgagcccgagatcatcgacgagcgcgatctcgccgcgctcaaggacgcgttcgaa
cgcaccccgtacgcccgccgcgtcccgtaccgggtggagacgcccttccacctcagcctc
gcgggccggctggtccggggccgtatcgacgccgtctaccgcgagccggccccggcctcg
gtcacgggcgcgggcacgggcgcgggggcgcacgccggcacgcacgccggggcgggcacc
ggcccgcacccccggccgcacccgtacacgtacgagatcgtggactggaagaccggccgg
acccgcaccgcagacccgctccagctcgccgtctaccggttggcctgggccgagcagctc
ggcattccgctgacggcggtgaccgcggcttttgtatacatacggagcggggaggtcgtc
cgccccgagcgcctccccggccgtcccgagctggaacgactgctcacccacgacacccgc
gccacggacggcacgggcggtgacgagagccacgacacagccacggacgagcgaacgtca
catccggcagacgagaccgcccgtcgggcccgttag
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