Sporosarcina pasteurii: E2C16_08685
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Entry
E2C16_08685 CDS
T06007
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spae
Sporosarcina pasteurii
Brite
KEGG Orthology (KO) [BR:
spae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spae03032
]
E2C16_08685 (topA)
03400 DNA repair and recombination proteins [BR:
spae03400
]
E2C16_08685 (topA)
Enzymes [BR:
spae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
E2C16_08685 (topA)
DNA replication proteins [BR:
spae03032
]
Prokaryotic type
DNA Topoisomerases
E2C16_08685 (topA)
DNA repair and recombination proteins [BR:
spae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
E2C16_08685 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
PFam54_60
Motif
Other DBs
NCBI-ProteinID:
QBQ05739
LinkDB
All DBs
Position
complement(1776662..1778734)
Genome browser
AA seq
690 aa
AA seq
DB search
MADYLVIVESPAKAKTIERYLGKKYIVRASLGHLRDLPKSQMGVDTENDYEPKYITIRGK
GPILQELKKDAKKVKKIYLAADPDREGEAIAWHLAFQLGVDIESNCRVVFNEITKDAIKE
SFKNPRPIDMDLVDSQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSVALRLIIDREN
EINAFEPEEYWSISAQFKKGRSKFEAAYHGNMKKKLGLANKEEVDAVLGQLQGESFEVHD
VVKRERKRNPALPFTTSSLQQEAARKLNFRARKTMMIAQQLYEGITIDKETVGLITYMRT
DSTRIADSAKEESIAFIEKTYGKEYLSANPNKTAKKNTSAQDAHEAIRPTSVMRPPAAMK
AFLSRDQYRLYKLIWERLVASQMAPAVLDTVRVDLVNGDVKFRATGSQVKFDGFMKVYVE
GDDDNKEEKDRILPPLEKGQHLKFEEIDPKQHFTQPPPRYTEARLVRTLEELGIGRPSTF
APTLDTIQRRGYVTLDARRFIPTELGTIVHNAVNEFFPDIIDVEFTAQMEKELDDIEEGK
KKWIKVLDNFYKDFEKHVEFADAEMEKIEIKDEPAGEDCEKCGEPMVYKLGRYGKFMACS
GFPDCRNTKAIMKPIGVTCPTCKEGQVVERKSKTRRVFFGCDQYPECEYVSWDKPVARPC
PKCDSTLVEKKSKKGVRIQCTECEYKEDIQ
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcagattatttagtaatagtagagtcccctgcaaaagcgaaaacaattgaacgctat
ttagggaagaagtatatagttagggcatcattaggacatttaagagaccttcctaaaagt
caaatgggggtcgacactgaaaatgattatgaaccgaaatatataacgatccgaggaaaa
ggcccgatacttcaagaattaaagaaagatgcaaaaaaagttaagaaaatttatcttgca
gctgaccccgacagagaaggggaagcaattgcttggcatttagcatttcaactaggcgtt
gatattgaatcaaattgccgtgttgtttttaatgaaattacaaaagatgcaattaaagaa
tcatttaaaaatccgcgaccgattgatatggatcttgttgactcacagcaagcacgtaga
attcttgaccgtttagttgggtataatattagcccgatattatggaagaaagtaaagaaa
ggtctatcggctggacgtgttcaatctgtagcattgcgactcattattgatcgtgaaaat
gagataaacgcttttgaacccgaagaatactggagtataagtgcgcagtttaaaaaaggg
cggtccaaatttgaggcagcctatcatggcaatatgaaaaagaagttaggcttagcgaat
aaagaagaagtagacgctgtacttggccaactacaaggagagagctttgaagttcacgat
gtagttaagagggaaagaaaaagaaatcccgcattgccatttacgacgtcatcacttcaa
caagaagctgcacgtaaattaaacttccgagctcgtaaaacaatgatgattgcccagcag
ttatacgaaggaataacgattgacaaagaaactgtcggactcattacgtatatgaggacc
gattcaactagaattgcagatagtgcaaaagaagagtcgattgctttcatcgaaaagacg
tacggcaaggaatatttatcagcgaatccaaataaaacggcgaaaaagaatacgagtgca
caggatgcacacgaagcaatccgtccgacgtctgtaatgcgtcctcctgcggcaatgaag
gcgtttctatcgcgtgatcagtatcgattgtataaattgatatgggagcgattagtcgca
agtcagatggcgccagcagtcttagacactgtgagagttgacctggtgaatggcgatgtg
aaattcagagcaacagggtcacaagtgaagtttgatggatttatgaaagtgtatgtagaa
ggcgatgatgataataaagaagaaaaagatcgcattttacctcctcttgaaaaggggcaa
catttaaagtttgaagagatagatccgaaacaacactttacgcagccgccaccgagatat
actgaagcaagactggtacgtacgcttgaagagttagggataggtcgtccttccactttt
gcgcctacgcttgacacaattcaacgtagagggtatgttacacttgatgcaagaagattc
atcccaacagaattaggaacgattgtgcacaatgcagtcaatgaattcttcccggatatt
atcgacgtagagtttaccgctcaaatggaaaaagaacttgatgatattgaagaaggtaag
aaaaaatggattaaggttctcgataatttttataaagattttgaaaagcatgttgagttt
gcagatgctgaaatggagaaaatcgaaataaaagacgaaccagctggagaagattgtgag
aagtgcggcgaaccaatggtttataaacttggccgttatggaaagtttatggcatgttca
ggcttcccggactgtcgtaacacgaaagcaattatgaagccgattggtgtcacttgtccg
acatgtaaagaaggacaagttgttgaacgtaaaagtaaaacaagacgtgtctttttcggt
tgtgaccaatatccagagtgtgaatacgtctcctgggataagccggttgcaagaccttgt
ccaaaatgtgacagtacacttgtggaaaagaaatccaaaaaaggcgttcgaattcaatgt
acagaatgtgaatataaagaagatatacagtaa
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