Sphingomonas paludis: ACPVPU_02615
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Entry
ACPVPU_02615 CDS
T12015
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
spaf Sphingomonas paludis
Pathway
spaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPVPU_02615 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spaf03021
]
ACPVPU_02615 (rho)
03019 Messenger RNA biogenesis [BR:
spaf03019
]
ACPVPU_02615 (rho)
Transcription machinery [BR:
spaf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACPVPU_02615 (rho)
Messenger RNA biogenesis [BR:
spaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACPVPU_02615 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
Spore_III_AA
AAA_22
GpA_ATPase
NACHT
AAA_25
Fungal_virus_P2_C
AAA_14
AAA
Motif
Other DBs
NCBI-ProteinID:
YBU91527
LinkDB
All DBs
Position
complement(550353..551609)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKTPPAELVGMAEALGVESASTLRKQDLMFAILKAQADNGEQIMGEGTIEVLQD
GFGFLRSPEANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEVRAPKDGERYFALTKLNKVN
FDDPDAVRHRVNFDNLTPLYPDSKLTLDPYDPTQKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVFPALDV
GKSGTRKEELLVDKGKLSKMWVLRRILMQMGTIDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgaaagacctcaagaaaacaccgcccgccgaactggtcggcatggccgaagcg
ctgggcgtggaaagcgcatcgacgctgcgcaagcaggacctgatgttcgccatcctgaag
gcgcaggccgataacggcgaacagatcatgggcgagggcacgatcgaggtgctgcaggac
ggtttcggcttcctgcgcagcccggaggccaattacctggccggtcccgacgacatctat
gtcagccccaaccaggtgcgcaagttcggcctgcgcaccggcgacacggtggaaggcgaa
gtgcgcgcgcccaaggacggcgaacgctatttcgcgctgaccaagctgaacaaggtgaat
ttcgacgatccggacgcggtgcgccaccgggtcaatttcgacaacctgaccccgctctat
cccgacagcaagctgacgcttgacccctatgatccgacgcagaaggacaagtccgcacgg
gtcatcgacatcgtctcgccgcagggcaagggccagcgcacgctgatcgtcgcgccgccg
cgcgtcggcaagacggtgatgctgcagaatatcgccaaggcgattaccgacaatcacccc
gaggtgttcctgatcgtcctgctgatcgacgaacggcccgaggaagtgaccgacatgcag
cgcagcgtgaagggcgaggtcgtgtcctccaccttcgacgagcccgccacgcgccacgtc
caggtcgcggaaatggtgatcgaaaaggccaagcggctggtcgagcataaaaaggacgtc
gtcatcctgctcgattccatcacccggctgggccgtgcctacaacacggtcgtgccatcg
tcgggcaaggtgctgaccggcggcgtcgatgccaatgcgctgcagcggccgaagcggttc
ttcggcgccgcgcgcaacatcgaggaaggcggttcgctctccatcatcgccaccgcgctg
atcgatacaggcagccgcatggacgaagtgatctttgaagagttcaagggcaccggcaac
tccgaaatcgtgctggaccgcaaggtcgccgacaagcgcgtgttcccggcgctggatgtc
ggcaagtcgggcacccgcaaggaagaattgctggtcgacaagggcaagctgtccaagatg
tgggtgctgcgccgcattctgatgcagatgggcacgatcgacgccatggagttcctgctc
gacaagatgaaggattccaagacgaacgaggatttcttcgattcgatgaaccagtaa
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