Sphingomonas paludis: ACPVPU_09530
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Entry
ACPVPU_09530 CDS
T12015
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
spaf Sphingomonas paludis
Pathway
spaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACPVPU_09530 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spaf03021
]
ACPVPU_09530 (rpoB)
03400 DNA repair and recombination proteins [BR:
spaf03400
]
ACPVPU_09530 (rpoB)
Enzymes [BR:
spaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACPVPU_09530 (rpoB)
Transcription machinery [BR:
spaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACPVPU_09530 (rpoB)
DNA repair and recombination proteins [BR:
spaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACPVPU_09530 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
B
FeS_hyd_N
Motif
Other DBs
NCBI-ProteinID:
YBU89944
LinkDB
All DBs
Position
complement(1970294..1974451)
Genome browser
AA seq
1385 aa
AA seq
DB search
MATKAIESGTMKRRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLR
SVFPIRDFAGTAELDFVNYELESPKFDQEECRQRGITYAAPMRVTLRLIVFEVDPDTDAR
SVLDIKEQDVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLF
AARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTSLLYALGLNSEEILNHFYNRVTFVR
GEGGWQIPFAAENWRGQKPMFDIVDAKSGEVIFPAGQKISPRAANKAAKDGLTDLLIPTE
EIYGRYSAFDLINETTGEIYVEAGDEIGAENLEKLDKAGIDRIELLDIDHVSTGAWIRNT
LKADKAEEREQALSDIYRVMRPGEPPTLETAESLFAGLFFDPDRYDLSAVGRVKLNMRLD
LDCPDTVTTLRTEDILEVVKTLVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLR
MERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRV
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETP
YRKVIDGKVTNEVVYLSAMEEQKHTVAQASAELNADGSFAEELVSARQGGEFLMALREQI
TLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKAEAPFVGTGMEETVAR
DSGAAIAAKRAGIVDQVDASRIVIRATGDVSAQESGVDIYTLMKFERSNQSTCINQRPLV
KVGDLVNAGDTIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSI
HIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVDVRVFNRHGIDKDERAMTIERE
EIERLKKDSDDERNILNRATWSRLKEMLLGQTATAVPKGLKKGVEITEEVLEEAERHEWW
KFAVADDAMQSNLEAVKVQYDEAVKRIKDKFDDRREKLERGDELPPGVLKMVKVFVAVKR
KLQPGDKMAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLG
WAARGLGARIGEALDAWREANPDPQAGQPPEAVRALLKEVYGENYDDQIDNRDTASLIDL
AQNVRAGVPMGTPVFDGAVEADVSAMLKLAGLDESGQVTLYDGRTGESFDRKVTVGYKYV
LKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLT
VKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKTDEDLGFDDDGV
AIAAE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggcgatcgagagcggcaccatgaagcgccgcatccgcaaggtgttcggc
gacatccacgaagtggtgcagatgccgaacctgatcgaggttcaacgcgaatcctacgaa
cagttcctgcggtcggatccgtcgatcggctatgtgtccggcctggaaaagacgctgcgc
agcgtgtttccgatccgcgacttcgccggcacggctgaactcgatttcgtgaactacgag
cttgaatcgccgaagttcgaccaggaagaatgccgccagcggggcatcacctatgccgcg
ccgatgcgcgtcacgctgcgcctcattgtgttcgaggtggacccggataccgatgcccgc
tccgtgctcgacatcaaggagcaggacgtttacatgggcgacatgccgctgatgacggag
aacggcacgttcatcgtcaacggcacggagcgcgtgatcgtgtcgcagatgcaccgctcg
cctggcgtcctgttcgaccatgaccgcggcaagacgcatgcttcgggcaagtatctgttc
gctgcccgcgtcatcccctatcgcgggtcgtggctggatttcgaattcgatgccaaggac
atcgtcaacgtccgcatcgaccgtaagcgcaagcttccggtgaccagcctgctctatgcg
ctggggctgaatagcgaggaaatcctcaaccacttctataaccgcgtgacgttcgtccgc
ggcgaaggcggctggcaaattccgttcgcggcagaaaactggcgtggccagaagccgatg
ttcgatatcgtcgacgccaaatccggcgaagtgatcttcccggccggccagaagatttcg
ccgcgcgctgctaacaaagcggccaaggatggcctgaccgacctgctgatcccgaccgag
gaaatttatggccgctattcggccttcgacctgatcaacgaaacgacgggcgaaatctat
gtcgaggcgggcgacgagatcggcgccgagaacttggagaagctggacaaggctggtatc
gaccggatcgagctgctcgacatcgatcatgtgtcgaccggtgcctggatccgcaacacg
ctgaaggctgacaaggccgaagagcgagaacaggcgctgtccgacatctaccgcgtgatg
cgccctggcgagccgccgacgctggaaacggctgaatcgctgttcgctggcctgttcttc
gatccggaccgctacgacctgtcggcggtcggccgcgtcaagctcaacatgcgcctcgac
ctggattgcccggatacggtgacgacgctgcgcaccgaagacatcctggaagtcgtcaag
acgctggtgaatctgaaggacggcaagggcgaggtggacgatatcgacaacctcggcaac
cgccgcgtccgttcggtgggcgagctgctggaaaatcagtatcgcgtcggcctgctgcgg
atggaacgggccgtcaaggagcgcatgagctcggtcgacgtgtcgaccgtcatgccgaac
gacctgatcaacgcgaagcccgccgtggcagcggtgcgcgaattcttcggctcgtcccag
ctgtcgcagttcatggatcagaccaacccgctgtcggaagtgacgcacaagcgccgcgtt
tcggcgctcgggccgggcggtctgacccgcgagcgcgctggcttcgaagtccgcgacgtt
catccgacgcattatggccgtatctgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgctggcgactttcagccgggtgaacaaatacggcttcatcgaaacgccc
tatcgcaaggtgatcgacggaaaggtgaccaacgaggtcgtctatctctccgcgatggag
gagcagaagcacaccgtcgcccaggcttcggccgagctgaatgccgacgggtcgtttgcc
gaggaactggtttccgcacgtcagggcggcgagttcctgatggcgctgcgcgaacagatc
acgctgatggacgtcagccccaagcagctggtgtcggtcgccgcttcgctcattccgttc
ctggaaaatgacgacgccaaccgcgccctgatggggtcgaacatgcagcgtcaggcagtg
ccgctgatcaaggcggaggcgccgttcgtcggcaccggcatggaagagaccgttgcgcgg
gattcaggtgctgcgatcgccgccaagcgggcgggcatcgtcgatcaggtcgatgccagc
cgtatcgtgatccgtgcgaccggcgacgtgtcggcgcaggaaagcggcgtcgacatctac
acgctgatgaagttcgaacggtcgaaccagtccacctgcatcaaccagcgtccgctggtg
aaggtcggcgacctggtcaatgccggcgacaccatcgccgatggtccttcgaccgaattc
ggcgaactggcgctgggtcgtaacgtgctggtcgcgttcatgccctggaacggctataac
tacgaagattcgatcctgatctccgaacgcatcgtcaaggacgacgtgttcacctcgatc
catatcgacgaattcgaagtcatggcccgcgacaccaagctggggccggaagacatcacc
cgcgacattcccaatgtgggtgaggaagcgctccgcaacctggacgaagccggcatcgtc
tatatcggcgccgaggtcgaaccgggcgacatcctggtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagctgctgcgcgccatcttcggcgaaaaggcgagc
gacgtgcgtgacacctcgctccgcctgccgccgggtgttgcgggcacgattgtcgacgta
cgcgtcttcaaccgtcacggcatcgacaaggacgagcgcgcgatgacgatcgagcgcgag
gagattgagcggctgaagaaggattcggacgacgagcgcaacattctgaaccgtgccacc
tggtcgcggctgaaggagatgctgctcggccagaccgcgactgcggtgccgaagggtctg
aagaagggcgtcgagatcaccgaggaggtgctggaggaggccgagcggcacgaatggtgg
aagttcgccgttgccgacgacgcgatgcagtcgaacctggaagcggtgaaggtccagtat
gatgaggccgtgaagcgcatcaaggacaagttcgacgaccgccgcgaaaagctggagcgc
ggtgacgaactgccgccgggcgtgctcaagatggtcaaggtgttcgtcgcggtgaagcgc
aagctgcagccgggcgacaagatggccggccgtcacggcaacaagggcatcatcagccgc
atcctgccgcaggaggacatgcccttcctggaggacggaaccccggtcgatttcgtgctc
aatccgctgggcgtgccgtcgcgcatgaacgtcggtcagatcttcgaaacccatctcggc
tgggccgcccgcggtctgggcgcgcggatcggcgaggcgctggatgcctggcgcgaagcc
aatccggacccgcaggccgggcagccgccggaggcagtcagggcactgctgaaggaagtg
tatggcgagaattacgacgatcagatcgataaccgcgataccgcctcgctgattgacctg
gcccagaatgtccgcgcgggcgttccgatgggaacgccagtgttcgacggcgcggtggaa
gccgacgtgtccgcgatgctgaagctggccgggctggacgaaagcggtcaggtgacgttg
tacgacggccgaaccggtgaatccttcgaccgcaaggtgactgtcggctataagtacgtc
ctgaagctgcaccacctggtcgacgacaagatccacgctcgctcgatcggcccctactcg
ctcgtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcggttcggcgaa
atggaggtctgggcactgcaggcatatggcgctgcctatacgctgcaggaaatgctgacg
gtgaagtccgacgacgtggtcggccgcaccaaggtctatgaggcgatcgtcaagggtgac
gacacgttcgaggccggcattccggaaagcttcaacgtgctcgtcaaggaaatgcgctcg
ctgggcctgaatgtcgaactcaagaccgatgaggacctgggcttcgacgacgacggcgtc
gcgatcgcggcggagtaa
DBGET
integrated database retrieval system
