Sphingomonas panacisoli: FPZ24_00870
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Entry
FPZ24_00870 CDS
T07288
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
spai
Sphingomonas panacisoli
Pathway
spai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ24_00870 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spai03019
]
FPZ24_00870 (pnp)
03016 Transfer RNA biogenesis [BR:
spai03016
]
FPZ24_00870 (pnp)
Enzymes [BR:
spai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FPZ24_00870 (pnp)
Messenger RNA biogenesis [BR:
spai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FPZ24_00870 (pnp)
Transfer RNA biogenesis [BR:
spai03016
]
Prokaryotic type
tRNA degradation factors
FPZ24_00870 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
BioW
OB_RRP5_4th
KH-I_KHDC4-BBP
DUF3016
PH_NF1
Motif
Other DBs
NCBI-ProteinID:
QDZ06202
UniProt:
A0A5B8LES1
LinkDB
All DBs
Position
176310..178664
Genome browser
AA seq
784 aa
AA seq
DB search
MFDTKKVSIEWGGKTLTLETGKVARQADGAIMATLGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKYSAAGRIPGGFFKRERGATEKETLVSRLIDRPIRPLFPEGFYNEINAIAQVLSY
DGENEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDEQVAAGDLDLVVA
ATYDAVMMVESEANELSEEVMLGAVLFAHDACKEIVKAIVKLAEKAAKDPWDMAKGDDTA
AIKAKLKDLIGKDIAAAYKLTDKSARSNALNEARAKAKAQFTADGLSPQEVMAGIKLTKK
LEADIVRGAILKDGKRIDGRTTTQIRPIVAETHFLPRAHGSALFTRGETQSICTTTLGTK
DAEQMIDGLNGLSYSNFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKE
DFPYTIRILSDITESNGSSSMATVCGGSLSMMDAGVPLKRPVSGIAMGLILEGKDYAILS
DILGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITKEIFEAALNQAKEGRAHILAEMNK
TLDHTREELSAHAPRIETFSIDKSKIRDVIGTGGKVIREIVATTGAKVDIDDEGVIKVSS
SDTAQIEAAIKWIKGIVEEPEVGKVYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIKNERV
EKVSDVLSEGQEVKVKVLEIDQRGKVRLSMRVVDQETGAELEDTRPPREPREGGDRGPRG
DRGPRRDGGGGRDGGRGPRRDGGDRGPRRDGGDRGPRRERSEGGNDDGPAPEFAPAFLTG
GNDD
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgttcgataccaagaaggtaagcatcgagtggggcggcaagaccctcacgctcgaaacg
ggcaaggttgcccgccaggccgacggcgcgatcatggcgacgctcggcgagaccgtcgtt
ctgtgcgcggtcaccgccgccaagtcggtcaaggaagggcaggacttcttcccgctcacc
gtccactatcaggaaaaatattccgcggccggccgcatccccggcggcttcttcaagcgc
gagcgcggcgcgaccgagaaggaaactttggtttcccgccttatcgaccgcccgatccgt
ccgctgtttccggaagggttctacaacgagatcaacgcgatcgcgcaggtgctgtcgtat
gacggcgagaacgagccggacatcctcgcgatggtcgccgcctccgccgcactgacgatc
tccggcgtgccgttcatgggcccgatcggggcggcgcgcgtcgggtatgtcgacggtgag
tacatcctgaatcctacggatgagcaggttgccgcgggcgatctcgatctcgtcgtcgcc
gcgacctacgacgcggtgatgatggtcgagtccgaagccaacgagctgtcggaagaggtc
atgctgggcgccgtcctgttcgcgcacgacgcgtgcaaggaaatcgtcaaggcgatcgtg
aagctcgccgaaaaggccgccaaggatccgtgggacatggccaagggcgacgacactgcc
gcgatcaaggccaagctgaaggacctgatcggcaaggacatcgccgccgcctacaagctg
accgacaagtcggcccgctcgaacgcgctcaacgaagcgcgcgcgaaggcgaaggcccag
ttcaccgccgacggcctcagcccgcaggaagtcatggccggcatcaagctcacgaagaag
ctggaagccgacatcgtccgcggcgccatcctgaaggacggcaagcgcatcgacggtcgc
accacgacccagatccgcccgatcgtcgcggaaacgcacttcctgccccgcgcgcacggc
tcggccttgttcacgcgtggcgagacgcagtcgatctgcaccaccacgctcggcaccaag
gacgccgagcagatgatcgacggcctcaacggcctgtcctactccaacttcatgctgcac
tataacttcccgccctattcggtcggtgaagtcggccgcttcggcgcccccgggcgtcgc
gaagtcggccacggcaagctcgcctggcgcgcgctgcacccggtgctgccgtcgaaggag
gacttcccctacacgatccgcatcctgtcggacatcaccgagtcgaacggctcgtcgtcg
atggcgacggtgtgcggcgggtcgctgtcgatgatggacgcgggcgtgccgctcaagcgc
ccggtcagcggcatcgcgatgggtctgatcctcgaaggcaaggattacgcgatcctgtcc
gacatcctgggtgacgaagatcacctgggcgacatggacttcaaggtcgcgggcacgtcc
gaaggcatcaccacgatgcagatggacatcaagatcgccggcatcaccaaggagatcttc
gaagccgcgctgaaccaggcgaaggaaggccgcgcgcacatcctggccgagatgaacaag
acgctcgaccacacgcgcgaagaactgtcggcgcacgcgccgcggatcgaaaccttctcg
atcgacaagtcgaagatccgcgacgtcatcggcaccggcggcaaggtcatccgcgagatc
gtcgcgacgaccggcgccaaggtcgacatcgacgacgagggcgtgatcaaggtgtcgtcg
tccgacaccgcgcagatcgaagccgcgatcaagtggatcaagggcatcgtcgaggagccg
gaagtcggcaaggtctatgacggcaaggtcgtcaacctggtcgatttcggcgcgttcgtg
aacttcatgggcggcaaggacggcctggtccacgtctccgaaatcaagaacgagcgcgtg
gaaaaggtgtccgacgtcctgagcgaaggccaggaagtcaaggtcaaggtcctcgagatc
gaccagcgcggcaaggtccgcctgtcgatgcgcgtcgtcgaccaggaaaccggcgccgag
ctggaagacacccgcccgccgcgcgaaccgcgtgaaggcggcgaccgtggcccgcgtggc
gaccgtggtccgcgtcgtgatggcggtggcggtcgtgacgggggccgtggcccgcgtcgc
gatggtggcgatcgcggcccgcgccgtgacggcggcgaccgaggtccgcgtcgcgagcgc
tcggaaggcggcaacgacgacggccccgcgcccgagtttgcgccggcgttcctgacgggt
ggcaacgacgactga
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