Sphingomonas panacisoli: FPZ24_03900
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Entry
FPZ24_03900 CDS
T07288
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
spai
Sphingomonas panacisoli
Pathway
spai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FPZ24_03900 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spai03400
]
FPZ24_03900 (uvrB)
DNA repair and recombination proteins [BR:
spai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FPZ24_03900 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FPZ24_03900 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
Kinesin
AAA_22
SWI2_SNF2
Microtub_bd
DUF87
AAA_16
SRP54
Motif
Other DBs
NCBI-ProteinID:
QDZ06726
UniProt:
A0A5B8LFK5
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Position
760848..763055
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AA seq
735 aa
AA seq
DB search
MAIQIRTNLAEPETGQAFIPHRPERPAKVEGGKAFKLVSDYEPSGDQPGAIKELTEAALS
GERDQVLLGVTGSGKTFTMAKVIETLQRPALILAPNKILAAQLYGEFKSFFPDNAVEYFV
SYYDYYQPEAYVPRSDTYIEKESSVNESIDRMRHSATRSLLERDDVIIVASVSCLYGIGS
VETYSAMIFDLKKGQTVDQREIVRKLVALQYKRNDQAFARGNFRVKGDNLEIFPSHYEDT
AWRISFFGDDIEDIVEFDPLTGKKVASLNYVRVFANSHYVTPGPTLKQAMEAIRHELAER
LKEMEAEGKLLEHQRLEQRTNFDLEMIAATGSCAGIENYSRFLTGRMPGEPPPTLFEYLP
ENALLFVDESHQTIGQINGMARGDHRRKITLAEYGFRLPSCIDNRPLRFNEWDAMRPQTT
YVSATPGGWEMEQTGGVFAEQVIRPTGLIDPPVEIKPVEDQVQDCINECRKTAEAGYRTL
VTTLTKRMAEDLTEFMHEAGLKVRYMHSDVETLERIELIRDLRLGVYDVLVGINLLREGL
DIPECGLVTILDADKEGFLRSETSLIQTIGRAARNVDGRVILYADRMTGSMERAINETNR
RREKQHAYNTEHGITPTTIKRDIGDIIKDVASRDQVTVEIDEDRPHMVGHNLRAYIEELE
KKMRKAASDLEFEEAGRLRDEIRSLEQEELGLPSSEHKAPIMGRSNEGKPGTRKTRYGKQ
SKMRAGMPGSSRRAR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atggcaatccagattcgcaccaacctggccgaacccgagaccgggcaggcgttcattcca
caccggcccgaacgcccggccaaggtggaaggaggcaaggcgttcaagctggtcagcgac
tacgaaccatcgggcgaccagccgggcgcgatcaaggagctgaccgaagcggccttgtcg
ggcgagcgcgaccaggtgctgctgggcgtgacggggtcgggcaagaccttcacgatggcg
aaggtgatcgagacgctgcagcgcccggccttgatcctggcgccgaacaagattctggcg
gcccagctctacggcgagttcaagagcttcttccccgacaatgcggtcgagtatttcgtc
agctactacgactattatcagcccgaggcgtatgtgccgcggtcggacacgtatatcgag
aaggaatcctcggtgaacgagtcgatcgaccggatgcggcattccgccacccggtcgctg
ctcgaacgcgacgacgtgatcatcgtggcgtcggtgtcgtgcctgtacggcatcggatcg
gtcgagacctattccgcgatgatcttcgacctgaagaagggccagaccgtcgatcagcgc
gagatcgtgcgcaagctcgtcgcgctgcagtacaagcgcaacgaccaggcgttcgcgcgc
ggcaatttccgcgtgaagggcgacaacctcgagatattcccgtcgcactatgaggacacc
gcgtggcggatctcgttcttcggcgacgatatcgaggacatcgtcgagttcgatccgctg
acgggcaagaaggtcgcgagcctcaactatgtccgcgtgttcgccaactcgcactacgtc
acgccgggaccgacgctgaaacaggcgatggaggcgatccgccacgaactcgccgagcgg
ctcaaggaaatggaggccgagggcaagttgctcgagcatcaacggctcgaacaacgtacg
aacttcgatctggaaatgattgcggcgactggatcttgtgcggggatcgagaattactcg
cgcttcctgaccggacgtatgccgggcgagccgccgccgaccctgttcgaatatttgccc
gagaatgcgttgctgttcgtcgatgagagccaccagacgatcggccagatcaacggcatg
gcgcggggcgaccatcggcggaagattacgctggccgaatatgggttccgcctgccgtcg
tgcatcgacaaccgccccttacgcttcaacgaatgggacgcgatgcgcccgcagacgacc
tatgtctcggcaacgccgggcgggtgggagatggagcagaccggcggcgtcttcgccgaa
caggtcatccgcccgaccgggctgatcgacccgccggtcgagatcaagccggtcgaggat
caggtgcaggactgcatcaacgaatgccgcaagacggcggaggccggctatcgcacgctc
gtcaccacgctgaccaagcgcatggcggaagatttgaccgaattcatgcacgaggcgggg
ctgaaggtccgctacatgcattccgatgtcgagacgttggagagaatcgagctgatccgt
gatcttaggctcggtgtctacgacgtactggtagggatcaacctgctgcgcgaaggcctc
gatattcccgaatgcggactggtcacgatcctcgacgccgacaaggaaggcttcctgcgc
tccgaaacctcgctgatccagacgatcggccgcgccgcgcgcaacgtcgacgggcgcgtg
atcctctatgccgaccgcatgaccggcagcatggagcgcgcgatcaacgagaccaatcgc
cgccgcgagaagcagcacgcctataacaccgaacacggcatcacgccgaccacgatcaag
cgcgacatcggcgacatcatcaaggacgtcgcgagccgcgaccaggtgacggtcgagatc
gatgaagaccgtccgcacatggtcggccacaatctgcgcgcgtacatcgaggaactcgaa
aagaagatgcgcaaggccgcgtcggacctggagttcgaagaggccgggcgcctgcgcgac
gagatccgcagcctggagcaggaagaactcggcctgccctcgagcgagcacaaagcgccg
atcatgggccggtcgaacgaaggcaagcccggcacgcgcaagactcgctacggcaagcag
tcgaagatgcgggcaggcatgccggggagcagccggcgggcgcggtaa
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