Sphingomonas panacisoli: FPZ24_08655
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Entry
FPZ24_08655 CDS
T07288
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
spai
Sphingomonas panacisoli
Brite
KEGG Orthology (KO) [BR:
spai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
spai03016
]
FPZ24_08655 (rnd)
Enzymes [BR:
spai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
FPZ24_08655 (rnd)
Transfer RNA biogenesis [BR:
spai03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
FPZ24_08655 (rnd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QDZ07548
UniProt:
A0A5B8LGV1
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All DBs
Position
1692494..1693672
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AA seq
392 aa
AA seq
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MHIHGLIEDSAALANLCTRLAQSPFVCVDTEFMRESTFWPELCLIQIADENEAAAIDPML
PGIDLQPLLDLLVNNEDVLKVFHAGGQDIEIIYNLTAKTPHPLFDTQIAAMALGQGEQIG
YSNLVDSWLGIQVDKGARFTDWARRPLETRQVDYAIGDVTHLAKIFPKMLARLKTTGRGA
WLDQEMERIADPANYANDPDLAWKRVRIAGRKPEVLGRLKSLARWREMEARGKNLPRGRI
VKDETLADLASHPPKKQSDLARVRGLSATWAGNDIGGRLMAALEDAKPLGSAEMPPRDDR
KPGLGKDGALVADLLKLLLKIRSRDIDVASRLLARSEELEALAAGQRDGLSILEGWRYDQ
FGHEALDLVEGRLAFAVVNGKLRMTRTEETAS
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgcatatccatggtctgatcgaggacagcgccgccctcgccaatctctgcacgcggctc
gcccaatctccgttcgtgtgcgtcgacaccgaattcatgcgcgagagcacgttctggccg
gagctttgcctgatccagatcgccgacgagaacgaggccgcggcgatcgatccgatgctg
ccggggatcgatctgcagcccttgctcgacctgttggtgaacaacgaggacgtgctcaag
gtctttcatgctggcggacaagacattgaaatcatctataatctaaccgcgaaaacgcca
catccgctgttcgacacgcagatcgcggcgatggcgctggggcaaggcgaacagatcggg
tattcgaacctggtcgatagctggctgggcattcaggtcgacaagggcgcccggttcacc
gactgggcgcggcggccgctcgagacgcgccaggtcgattacgcgatcggcgacgtcacg
catctcgccaagattttccccaagatgctcgcgcgattgaagacgaccgggcgcggcgcg
tggctcgatcaggaaatggagcggatcgccgatcccgccaactacgccaacgatcccgac
ctggcgtggaaacgcgtgcgcatcgcgggtcgcaagcccgaggtgctgggccgactgaag
tcgctggcgcggtggcgcgagatggaagcgcggggcaagaacctgccgcgcggccgcatc
gtcaaggacgagacgctggccgacctcgccagccacccgccgaagaagcagagcgacctc
gcgcgtgtccgcgggctgtcggcgacctgggcgggcaacgatatcggcggacggctgatg
gcggcgctcgaggatgccaagccgctcggctctgccgaaatgccgccgcgcgacgaccgt
aagcccggactcggcaaggacggtgcgctggtggcggacttgctgaagctactgctcaag
atccgttcgcgcgacatcgacgtcgcatcgcgcttgctcgcgcggtcggaggagctggag
gcgctggctgccgggcagcgagacgggctctcgattctcgaaggctggcgctacgaccag
ttcggccacgaagcgctcgatctggtcgaaggacggttggccttcgcggtggtcaacggc
aagctgcggatgacgcggacggaggagacggcatcgtga
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