Sphingomonas panacisoli: FPZ24_16115
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Entry
FPZ24_16115 CDS
T07288
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
spai
Sphingomonas panacisoli
Pathway
spai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
FPZ24_16115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spai03400
]
FPZ24_16115
Enzymes [BR:
spai01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
FPZ24_16115
DNA repair and recombination proteins [BR:
spai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
FPZ24_16115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
DUF7146
MCR
Motif
Other DBs
NCBI-ProteinID:
QDZ08805
UniProt:
A0A5B8LMB4
LinkDB
All DBs
Position
complement(3236589..3237974)
Genome browser
AA seq
461 aa
AA seq
DB search
MRVVTLETEDDFDGWRDVVRGLVLDHVPPDQVVWQVGDEHGELFTGQVPLAPPSTGAFSV
PRPFIDLARNAILHTDRERFALLHTLLVRLRDQPKLMEDQADPLVRKLEGFAKAVRRDIH
KMRAFVRFREVQDDGGTRYVAWFEPEFHIVRANAAFFVNRFATMRWSILTPALTIHWDGK
RLTEGLGASKADAPDGDPVEAVWKTYYASIFNPARVKVGAMLKEMPRKYWKNMPETALVP
ALIASAQARESEMVATAKTKIVPGGNIQAAWEALREEAMNCTRCHLYKHATQTVFGEGPV
DADLMFVGEQPGDQEDLAGHPFVGPAGQMFDRAMADAGVDRARAYVTNAVKHFKYELRGK
RRIHSKPDAGEITACRWWIDQELALVKPKMTVALGATAARSLFGKAMTIGRERGRVLELP
DGGAAWITVHPSYLLRLPDEDAKREEYAKFVADLKAAAAAM
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgttgttacgctggagacggaggacgatttcgacggttggcgcgatgtggtgcgc
gggttggtgctcgaccatgttccgcccgaccaggtcgtgtggcaagtcggtgatgaacat
ggcgagctgttcaccggccaagtgccgctcgccccgccgtcgacgggggcgttttcggtg
ccgcggccgttcatcgacctcgcgcgcaatgccatcctccacaccgaccgcgagcggttc
gcgttgctccatacgttgctggtgcggctgcgcgatcagccgaagctgatggaggaccag
gctgacccgctggtccgcaagctcgaagggttcgccaaggcggtgcggcgcgatatccac
aagatgcgcgcgttcgtgcgcttccgcgaggtacaggacgatggcggcacgcgctacgtc
gcctggttcgaacccgaatttcatatcgtccgcgccaatgcggcgttcttcgtcaaccgc
ttcgcgacgatgcgttggtcgatcctgacgcctgcgctcacgatccattgggacggcaaa
cggctgaccgaaggactgggcgcgtcgaaggcggacgcgcccgacggcgacccggtcgag
gcggtctggaagacctattacgcgtcgatcttcaacccggcgcgggtcaaggtcggcgcg
atgttgaaggagatgccgcgcaaatattggaaaaacatgcccgaaaccgcgttggtgccg
gcgttgatcgcgagcgcgcaagcccgggagagcgagatggtggcgacggcgaagaccaag
attgtaccaggcggcaatatccaggcggcgtgggaagcgctgcgcgaagaggcgatgaac
tgcacccgctgccacctctacaagcacgcgacgcaaaccgtgttcggggaagggccggtc
gacgccgacctgatgttcgtcggcgagcaaccgggggaccaggaggatctggccgggcat
ccgttcgtcggccccgcggggcagatgttcgaccgcgccatggcggacgccggtgtggac
cgggcgcgcgcctatgtcaccaatgcggtcaagcatttcaaatacgaactgcgcggtaag
cgccgcatccactcaaagcccgacgcgggagagatcaccgcatgccgatggtggatcgac
caggaactcgcgctggtgaagccgaaaatgaccgtggcgctgggcgcgaccgcggcgcgc
agcctgttcggcaaggcgatgaccatcggccgcgaacgcggccgcgtgctcgaactgccc
gatggcggtgcagcgtggatcaccgtccacccgagctacctgctgcgcctccccgacgaa
gacgcgaagcgcgaggagtatgcgaagttcgtcgccgacctgaaggccgccgccgcggcg
atgtaa
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