Sphingomonas panacisoli: FPZ24_16520
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Entry
FPZ24_16520 CDS
T07288
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spai
Sphingomonas panacisoli
Brite
KEGG Orthology (KO) [BR:
spai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spai03032
]
FPZ24_16520 (topA)
03400 DNA repair and recombination proteins [BR:
spai03400
]
FPZ24_16520 (topA)
Enzymes [BR:
spai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FPZ24_16520 (topA)
DNA replication proteins [BR:
spai03032
]
Prokaryotic type
DNA Topoisomerases
FPZ24_16520 (topA)
DNA repair and recombination proteins [BR:
spai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FPZ24_16520 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
SpoIIE
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QDZ08879
UniProt:
A0A5B8LLP4
LinkDB
All DBs
Position
complement(3315163..3317697)
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AA seq
844 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGADYRVLASYGHVRDLPPKDGSVKPEDGFAMDWENYPDKAK
QLKAITDEAKKADRLILATDPDREGEAISWHVQEVLRGRRALPKDVQRVTFNAITKATVT
EAMRHPRELDEDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE
REIEAFVAQEYWSVAALMEQDGTSFTARLVKWNGEKIDRLTIGAEGDAMKAKADVENGRF
TVQSVETKPATRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQGLYEDGAITYMRTDGVQ
MDGSAISAARNAITNRYDASYVPDKPRMYQTKAKNAQEAHEAIRPTDFAKDRAGSGDHAR
LYDLIWKRAMASQMASARMERTTIDLADGTGRHGLRATGQVVIFPGYLALYEEGQDDEAD
EESRRLPRLRDGDVPAKREVTAEQHFTQPPPRFSEASLVKRLEELGIGRPSTYASTIQVL
KDRDYVRVEKNRFFAEESGRLVTAFLERFFERYVSFDYTAGLEDELDEISGGRAQWQAVL
EAFWRDFKPRTAEVMEFKPSEVTQQLDQFLAPYLFPDKADGGDPRLCPNCGQGQLALRGG
KFGAFIACSNYPECKYTRRFAQPGGAEGEDSGPEGLGKDPVTGLEVERKSGRFGPYIQLG
EGKDAKRASIPKDIPELDLEWALKLLSLPREIGAHPESGKPITASIGRYGPYLAHDGKYA
RLQSTMEVFETGMNAAVVKLAEAAANGGRPARGAQAPLKVLGAHPRTEAEIKLMEGRYGA
YVTDGTTNATLPKSIDKDALTLEEAAQLIDTRAAAAPAKGKRKAAKKAPAKKKAAPKKAA
ATKK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcgtcatcgtcgaatcgccggccaaggccaaaaccatcgagaaatatctcggc
gcggactatcgcgtgctcgcgagctacggccatgtccgcgacttgccccccaaggacggg
tcggtgaagcccgaggacggcttcgcgatggattgggagaattatcccgacaaggccaag
cagctgaaggcgatcaccgacgaggccaagaaggccgaccgcctgatcctcgccaccgac
cccgatcgcgaaggcgaggcgatttcgtggcacgtgcaggaagtgctgcgcggccgccgc
gcgctgcccaaggacgtccagcgcgtgacgttcaacgccatcaccaaggcgaccgtgacc
gaggcgatgcggcatccgcgcgagctcgacgaggatctgatcgacgcctaccgcgcccgc
cgcgcgctcgactatctggtcggcttcacgctcagccccgtattgtggcgcaagctgccc
ggcgccaagtccgccggccgcgtccagtcggtcgctttgcgcctgatcgtcgatcgcgag
cgcgagatcgaagcgttcgtcgcgcaggaatattggtcggtcgcagcattgatggagcag
gacggcaccagcttcaccgcgcgcctggtcaaatggaacggcgagaagatcgaccgcctc
accatcggcgccgagggtgacgccatgaaggcgaaggccgacgtcgagaacggtcgcttc
accgtccagtcggtcgaaaccaagcccgcgacgcgcaatccgccgccgcccttcaccacc
tcgacgctgcagcaggaagcggcgcgcaagctcggcttctccgccagccacacgatgcgg
atcgcgcaggggctctacgaggacggcgcgatcacctatatgcggaccgacggcgtgcag
atggacggtagcgcgatttccgccgcgcgcaacgccatcaccaaccgctacgacgcgagc
tacgtcccggacaagccgcgcatgtaccagaccaaggccaagaacgcgcaggaagcgcac
gaagcgatccgaccgaccgacttcgccaaggatcgcgccggatcgggcgaccatgcccgg
ttgtacgatttgatctggaagcgcgcgatggcgagccagatggcgtcggcgcgcatggag
cgcacgacgatcgatctcgccgacggcaccgggcgtcacggcctgcgcgcgactggccaa
gtggtgatcttccccggctatctcgcattgtacgaggaaggtcaggacgacgaggcggac
gaggaatcgcgccgtctgccgcgactgcgcgacggcgacgtgccggcgaagcgcgaggtg
accgccgagcagcatttcacccagccaccgccgcgcttttccgaagcgtcgctggtcaag
cggctcgaagagctcggcatcgggcgcccgtcgacctacgcttcgacgattcaggtgctc
aaggaccgcgattacgtccgcgtcgagaagaaccgcttcttcgccgaggaatcgggccgg
ctggtgaccgcgttcctcgaacgctttttcgaacgctatgtcagcttcgactacacggcc
gggctggaagacgaactcgacgagatttcgggcggccgcgcgcagtggcaggccgtgctc
gaagccttctggcgcgacttcaagccgcgcaccgccgaggtgatggagttcaagccgtcc
gaagtgacgcagcagctcgaccagtttcttgcgccctatctgttccccgacaaggccgat
ggtggcgatccgcgtctctgcccgaattgcggccagggccaactcgcgctgcgcggcggc
aagttcggcgccttcatcgcttgctcgaactatcccgagtgcaaatacacccgccgtttc
gcgcaacccggcggcgccgagggcgaggatagtgggccggaaggactgggcaaggatccg
gtcaccgggctggaagtcgaacgcaagtcgggtcggttcgggccgtacatccagctcggc
gagggcaaggacgccaagcgcgcgtcgatcccgaaggacattcccgaactcgacctcgaa
tgggcgctcaagctcctgagcctgccgcgcgaaatcggtgcgcatccagagagcggcaag
ccgatcaccgcatcgatcggccgctacggtccctatctcgcgcacgacggcaagtacgcc
cggctgcaatcgacgatggaggtgttcgagaccggcatgaacgccgccgtggtcaagctg
gccgaggcggcggcgaacggcggacggccggcacggggagcgcaggcgccgctcaaggtg
ctgggcgcgcatccgcgcaccgaggccgagatcaagctgatggagggccgttacggcgcg
tacgtcaccgacggcacgaccaacgcgaccctgcccaagtcgatcgacaaggatgcgctg
acgctggaagaagccgcgcaactgatcgatacgcgcgctgcggcagcgcccgcgaagggc
aagcgcaaagcggcgaagaaggcgccggcgaagaagaaagccgcgccgaaaaaggctgct
gctacaaagaagtag
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