Sphingomonas panacisoli: FPZ24_16750
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Entry
FPZ24_16750 CDS
T07288
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
spai
Sphingomonas panacisoli
Pathway
spai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPZ24_16750 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spai03019
]
FPZ24_16750 (recQ)
03400 DNA repair and recombination proteins [BR:
spai03400
]
FPZ24_16750 (recQ)
Enzymes [BR:
spai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPZ24_16750 (recQ)
Messenger RNA biogenesis [BR:
spai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FPZ24_16750 (recQ)
DNA repair and recombination proteins [BR:
spai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FPZ24_16750 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
QDZ08917
UniProt:
A0A5B8LL36
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All DBs
Position
complement(3359564..3361333)
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AA seq
589 aa
AA seq
DB search
MTDPVSVLHSTFGFPAFRGVQESVVSRVLAGERTLAVMPTGAGKSLCYQLPAVMLEGTCV
VVSPLIALMHDQLRAAEAVGIRAATLTSVDENRAETRGRFLDGELDLLYVAPERASGSDF
RDLLERGKLSLFAIDEAHCVSEWGHDFRPDYRLLRPLLDRFPDVPRLALTATADTHTRAD
ILDQLGIPKDGLIVAGFDRPNIRYAISAKDNTTRQIADLIAEQPGPGIVYAQTRAATEKL
AEALAKTGRPTRAYHAGLEPPIRAKNQADFVASEDMVIVATVAFGMGIDKPDVRFVAHAG
LPKSIEAYYQETGRAGRDGDPAVAHLFWGAEDFAKARQRMNEVETARQPGERARLSALGA
LVETAGCRRKLLLAHFGDDAPDNCGNCDNCLNPPAATDATTVAQKFLSAVFRTGQSFGVG
YIESILTGQSSERSLMNGHEALSVFGIVDGAEEAALIKPVARALLLKDALRANDFGGLEF
GPAAKALLKGEAELSLIVPPKRERRRRGSAGGGANPIGDPLFEALRDKRRELAQEGKVPP
YVIFHDSVLRDMAAMKPGSLSALGTISGVGERKLEAYGDAFLQVIREAA
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcccgtttccgtgctccattcgaccttcggcttcccggcgtttcgcggggtg
caggaaagtgtcgtgtcgcgcgtgctggcgggcgagcggacgctggcggtgatgccgacc
ggggcgggcaagtcgttatgctatcagttgccggcggtgatgttggaggggacgtgcgtt
gtcgtcagcccgctgatcgcgctgatgcacgaccagttgcgtgcggcggaggcggtcggg
attcgggcggcgaccctgaccagtgtcgacgagaaccgggcggagacgcgcgggcggttc
ctcgatggcgagctcgacctgctctatgtcgcgccggagcgggcatccggttcggatttc
cgcgacctgctggagcgcggcaagctcagcctcttcgcgatcgacgaagcgcattgcgtc
agcgaatggggacacgatttccgccccgattatcgcttgctgcggcccttgctcgatcgc
tttcccgacgtgccgcggctcgcgctgaccgcgacggccgatacgcacacccgcgccgat
atcctcgaccagctcggtatccccaaggacggcctgatcgtcgccggtttcgaccgcccc
aacatccgttacgcgataagcgcgaaggacaatacgacgcgccagatcgccgacctgatc
gctgaacagccggggccggggatcgtctatgcccagacgcgcgcggcgaccgagaaattg
gccgaggcgctggccaagaccgggcggccgacgcgcgcttatcacgccggtctcgaaccg
ccgatccgcgcgaagaaccaggccgatttcgtcgccagcgaagacatggtgatcgtcgcg
acggtggcgttcgggatggggatcgacaaacccgacgtccgcttcgtcgcgcatgccggg
ctgcccaagtcgatcgaggcctattaccaggaaaccggccgcgcgggccgcgacggcgac
ccggcggtggcgcatctgttctggggcgcggaggatttcgccaaggcgcgtcagcggatg
aacgaggtcgagaccgcgcgccagccgggcgaacgcgcgcggctgagtgcgctcggtgcg
ctggttgaaaccgccggatgccgccgcaagctgctgctcgcgcatttcggcgacgacgcc
ccggacaattgcggcaattgcgacaattgcctcaacccgcccgcggcgaccgatgccacg
acggttgcgcagaagttcctgtcggcggtgttccgcaccgggcagagcttcggcgtcggc
tatatcgagagcatcctgaccggccagtcgagcgagcggtcgctcatgaatggccacgag
gcgctgtcggtattcggaatcgtggatggcgcggaggaagccgcgctgatcaagccggtc
gcgcgcgcactgctgctcaaggacgccttgcgtgccaacgatttcggtgggctggagttc
gggcctgcggccaaggcgctgctcaagggcgaggctgagctgtcgctgatcgtaccgccc
aagcgcgaacgccgacggcgcgggagtgccgggggcggcgcgaatccgatcggcgatccg
ctgttcgaggcgttgcgcgacaagcgccgcgaactcgcgcaggaaggcaaggtgccgcct
tacgtcatcttccacgattcggtgctgcgcgacatggcggcgatgaagcccggcagcctg
tcggcgctcggcacgatttcgggcgtgggcgaacgcaagctggaggcttatggtgacgcg
ttcctgcaagtgatccgggaggcggcatga
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