Sulfurimonas paralvinellae: FM071_04160
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Entry
FM071_04160 CDS
T06862
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spal
Sulfurimonas paralvinellae
Pathway
spal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM071_04160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spal03019
]
FM071_04160
Enzymes [BR:
spal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FM071_04160
Messenger RNA biogenesis [BR:
spal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FM071_04160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
UTP25_NTPase-like
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QOP45519
UniProt:
A0A7M1B706
LinkDB
All DBs
Position
complement(784944..786188)
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AA seq
414 aa
AA seq
DB search
MTFNSLGLSAPILKAVKEQGYTTPTPIQAKAIPVILEKKDILAGAQTGTGKTAGFTLPLL
ELLSRKESKKKSHKVRALILTPTRELALQVAENVALYAKHTPFKSAVIFGGVKINPQIAQ
LRKGVDIVIATPGRLLDHISQKTIDLREIEFLVLDEADRMLDMGFVNDIKKIVNIIPKER
QTLLFSATYSAPIKRLSNQFLKSPTLIEVARTNESNAIVEQSIYPVDKSRKRELLTHLIN
EGKWQQVLVFTRTKHGANKLSGQLEKDGISSAAIHGNKSQNARTKALADFKKGDVRVLVA
TDIAARGIDIDQLPHVVNFELPNVSEDYVHRIGRTGRAGNKGEAISLVCVDENDFLDGIE
KLIKKDIPKVWLKGFKPDPSIKAEPINMGGNRGSRSKPRGNSNGRNANRSRARR
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atcacattcaattcactcggtctctcagctccgatcttaaaagctgtaaaagaacaaggc
tatacaacccctactcctattcaggcaaaagcaattcccgttattttagaaaaaaaagac
atcttggcaggtgcacagacaggtacaggaaagacagcaggttttacactgccgctttta
gagctgctctcacgcaaagagtcaaagaagaaatcacataaagtacgcgcgcttatttta
acgccgacacgtgagcttgcgcttcaagtcgctgaaaatgtagcactctatgcaaaacac
acaccttttaaatcagccgttatttttggcggcgtaaaaataaacccacagatcgcgcaa
ctgcgaaaaggtgttgatatcgtcatcgcaacaccaggacgtctgcttgaccatatctcg
caaaagacaatcgatctgcgtgagatagagtttttagtcctcgatgaagcagacagaatg
cttgacatgggttttgtaaatgacatcaaaaagattgtaaacatcattccaaaagagcgt
caaacgcttcttttctcagcaacttactccgcacctatcaaaagactctccaaccagttt
ttaaaatcacccacacttatcgaagtcgcacgaactaatgagtccaatgccattgtcgaa
cagagtatctaccctgtagacaaatcaagaaaaagagaactgctcactcacctcataaat
gaaggcaaatggcagcaggttttagtctttacccgcacaaaacacggtgcaaacaaactc
agcggacaacttgaaaaagacggcataagttcagcggccatccatgggaataaaagtcaa
aatgctcgtacaaaagcattggcagactttaaaaaaggtgacgtgcgtgttcttgttgca
accgacattgcagcacgcggcatcgacatcgaccagctgcctcacgtagtcaattttgag
ctgccaaatgtcagtgaagattatgtccatagaatcgggcgaacaggtcgtgcaggaaac
aaaggcgaggcaatctctcttgtctgtgtcgatgaaaatgattttttagatggtattgaa
aaactcataaaaaaagatataccaaaagtttggctcaaaggttttaaaccagatccgagc
atcaaagcagaaccaatcaatatgggaggaaatagaggctcacgcagtaagcctcgtgga
aactctaacggcagaaatgccaatagaagcagagcaagaagataa
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