Sulfurimonas paralvinellae: FM071_10265
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Entry
FM071_10265 CDS
T06862
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
spal
Sulfurimonas paralvinellae
Pathway
spal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FM071_10265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spal03019
]
FM071_10265
Messenger RNA biogenesis [BR:
spal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FM071_10265
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
QOP46652
UniProt:
A0A7M1BCY5
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Position
complement(2015600..2017558)
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AA seq
652 aa
AA seq
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MAEEKKEAQQQSKPQTDRKPNNNRRNNNRKPNNNQNRQGADKNSQNKNQNAKPSNNNRNK
SRNRHKRGPAPVDDTLKSFVIKNQEVHKQRLNPHYKLNLDSKAKVRITPLGGLGEIGGNI
AVFETDNEAILIDVGMSFPDEEMHGVDILVPDFSYIREIKDKIVGIIITHAHEDHIGAVP
YLFREMQFPIYGTPLPLAMIGNKFDEHHLKEFRKYFNPVEKRKVYKIGNDFEIEWMHMTH
SILDSSSLAITTEAGTIIHTGDFKIDHTPVDGYTADLHRLAHYGDKGVLCLLSDSTNSHN
PAPTPSELSVAPALDRVFSKAEGRIILSTFSSNIHRVYQAIQYGIKYGRKVCVIGRSMER
NIEVALQYDYIKFPKNIFVDADEVARMNDKDVLIVTTGSQGEANSALFRMSIGEHRHIKI
KPSDLIILSSRAIPGNEGSISQMLNHLQKGGAKVAMDRDLHVSGHASMEEQKLMLRLVNP
KFFLPVHGEYNHVMRHKETAMMCGVPERNILLMTDGEQIEVAPKYMRKVKTVKTGKTYID
NQNNHEIEDDIVLDRQKLATDGVVMMVAQVSEQTGKMMDKPKVTTFGIVPDKRDKAFAKE
MEEIIENFLINMKPGLIGSPKTLEGDLRQVVRKHIYRKMKKYPLIVPHILIH
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagaaaagaaagaggcgcagcagcaaagcaaacctcaaacagaccgcaaacca
aataacaacagaagaaacaacaatcgtaagcctaataataatcaaaataggcaaggtgct
gataaaaacagccaaaataagaaccaaaatgcaaaaccgagtaacaataaccgcaataaa
agccgtaaccgacacaaaagaggccctgctccagtcgatgatacactaaaatcatttgtc
attaaaaatcaggaagttcataaacagagattgaaccctcattataaattgaacctggac
tcaaaagcaaaagtgcgtatcacaccgcttggcggccttggtgagatcggtggaaatatt
gctgtgttcgaaacagataatgaagcgatcttgatagatgtcggtatgagttttccagat
gaagagatgcatggagttgatatcttagtgcctgatttttcttatattcgtgagataaaa
gacaagatcgtcggtattataatcacacacgcacacgaagatcatatcggtgcggttccg
tacctttttagagaaatgcagtttcctatctatggaacaccgcttcctcttgcaatgatt
ggtaacaaatttgatgaacatcaccttaaagagtttagaaaatatttcaatccggttgag
aaacgtaaagtctataaaatcggaaatgactttgagatcgagtggatgcatatgacacac
tctattttagattcttcttcacttgcaattacgacagaagctggaactatcattcacacg
ggtgactttaaaatcgaccatacaccggttgatggatatactgccgacttgcatcgcttg
gcgcattatggagataaaggtgtgttgtgtttgttgagtgattcaacgaattcacataac
cctgctccaacaccttcagaactttctgtagcaccggcacttgacagagtcttctctaaa
gcagaagggcgtattatcctctcgacgttcagctcgaacattcaccgtgtctatcaggca
attcagtacggaatcaagtatggacgtaaggtttgtgttatcggccgttctatggagaga
aacattgaagtcgctctacagtatgactatattaaatttccgaaaaatatttttgttgat
gcagatgaagttgcacgcatgaatgacaaagatgttcttattgtgacaacgggttctcaa
ggagaagcgaattcggcactctttagaatgagtatcggtgagcatagacatatcaagata
aaaccgagtgatttgattattctctcttcacgtgcgattcctggtaatgaaggaagcatt
tcacaaatgctcaatcaccttcaaaaaggcggtgcaaaagttgcgatggacagagattta
cacgtttcaggacacgcttctatggaagaacagaaattgatgcttcgtcttgtcaatcct
aagttctttttacctgttcacggtgagtacaatcatgttatgagacataaagagacagca
atgatgtgtggtgttcccgagagaaatattctcttgatgacagatggtgagcagatagaa
gttgcaccgaaatatatgagaaaagtcaaaacggtcaagacaggtaaaacatatattgat
aatcaaaacaatcatgagattgaagatgatatcgtgcttgaccgccaaaaacttgcaact
gacggtgtggttatgatggttgcacaggtgagtgaacagaccggtaagatgatggacaaa
ccaaaagttacgacctttggtattgtaccggataaacgagataaagcttttgcaaaagag
atggaagagatcattgaaaatttccttatcaatatgaagccggggcttattggcagtcca
aaaacattagagggtgatctgcgtcaggtggtgagaaaacacatctaccgcaaaatgaag
aaatatcctctcatcgttcctcatattcttatccactag
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