Streptococcus parapneumoniae: SP4011_00260
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Entry
SP4011_00260 CDS
T10256
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spam Streptococcus parapneumoniae
Pathway
spam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SP4011_00260 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spam03400
]
SP4011_00260 (mfd)
Enzymes [BR:
spam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SP4011_00260 (mfd)
DNA repair and recombination proteins [BR:
spam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SP4011_00260 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
AAA_22
RecG_dom3_C
AAA_16
nSTAND3
Zeta_toxin
AAA_5
Motif
Other DBs
NCBI-ProteinID:
BDT63609
LinkDB
All DBs
Position
17822..21331
Genome browser
AA seq
1169 aa
AA seq
DB search
MVTLLDLFSENDQIKKWHQSLTDKKRQLMLGLSISTKALAIASSFKKEDKIVLLTSTYGE
AEGLISDLISILGEEFVYPFLVDDSPMVEFFMSSQEKIISRVEALRFLTNPSKKGILVCN
IAASRLILPSSTVFKESIIKIAVGEEYDQHALIHQLKEIGYRKVTQVQTQGEFSLRGDIL
DIFEISQLEPCRIEFFGDEVDGIRTFEVETQLSKENQSELIIFPASDILIREEDYQRGQL
TLEKQILKTLSPILKSYLEEILSSFHQKQSHADSRKFLSLCYEKSCTVFDYIEKDIPIFF
DDYQKLMNQYEVFERELAQYFTEELQNGKAFSEMQYFADTEQIYKKQSPVTFFSNLQKGL
GNLKFDQIYQFNQYPMQEFFNQFSFLKEEIERYKKMDYTIILQSSNSMGSKTLEDVLEEY
QIKLDSRDKSSICQESVNLIEGNLRHGFHFVDEKILLITEHEIFQKKLKRRFRRQHVSNA
ERLKDYNELEKGDYVVHHIHGIGQYLGIETIEIKGIHRDYVSVQYQNGDQISIPVEQIHL
LSKYISSDGKAPKLNKLNDGHFKKAKQKVKNQVEDIADDLIKLYSERSQLKGFAFSADDE
EQDTFDDAFPYVETDDQLRSIEEIKRDMQDSQPMDRLLVGDVGFGKTEVAMRAAFKAVND
HKQVVVLVPTTVLAQQHYTNFKERFQNFAVNIDVLSRFRSKKEQTETLEKLKNGQVDILI
GTHRVLSKDVVFADLGLMIIDEEQRFGVKHKETLKELKKQVDVLTLTATPIPRTLHMSML
GIRDLSVIETPPTNRYPVQTYVLEKNDSVIRDAVLREMERGGQVYYLYNKVDTIDQKVSE
LQELIPEASIGYVHGRMSEIQLENTLLDFIEGQYDILVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPEKSISEVSEKRLEAIKGFTELGSGFKIAMR
DLSIRGAGNLLGKSQSGFIDSVGFELYSQLLEEAIAKRNGNANTNTRTKGNAELILQIDA
YLPDTYISDQRHKIEIYKKIRQIDNRVNYEELQEELIDRFGEYPDVVAYLLEIGLVKSYL
DKVFVQRVERKDNKVTVQFEKVTQRLFLAQDYFKSLSATNLKVGIAENKGSMELVFDVRN
KKDYEILEGLLIFGESLLEIKESKKENSI
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atggtaaccttattagatttattctcagaaaatgatcagattaaaaaatggcatcaaagt
ttaacagataagaaaagacaattaatgttaggcttgtcaatttctacaaaagctttagcc
atcgctagtagttttaagaaagaagataagattgttttattgacatcaacttatggagaa
gcagaagggcttattagtgatcttatttctatcttgggtgaggaatttgtctatccattt
ttggtagatgattcccctatggtcgagttttttatgtcttcacaagaaaaaatcatctca
cgggttgaagccttacgttttttgactaatccatctaagaaagggattttagtttgtaat
atcgcagcaagtcgattgattttaccctcttcaactgtatttaaagaaagtattataaaa
attgcagttggtgaagaatatgaccaacatgcgcttatccatcagttaaaggaaattggt
tatcgaaaggttacacaagtacaaactcaaggagaatttagtcttcgaggagatatttta
gatatttttgaaatatctcagttagaaccttgccgaattgagttttttggtgatgaagta
gatggaattcgtacttttgaagtcgaaacacaattatcgaaagaaaatcagtcagaactc
atcatctttccagctagcgatattctcataagagaagaagattatcaacgaggtcagttg
actttagaaaaacaaattttgaagactctatcgccgattctgaaatcttatctagaagaa
attctttcaagttttcatcaaaaacaaagtcatgcagattctcggaaatttttatctttg
tgttatgagaaatcatgtaccgtatttgattatatcgaaaaagacataccaatattcttt
gatgattatcagaaattgatgaatcagtatgaagtatttgaaagagaattagcacaatac
tttacagaagaattacagaatggtaaagcattttctgagatgcagtattttgcagataca
gagcaaatctataaaaaacagagtccggttacctttttctctaatctacaaaaggggtta
ggaaatctcaagtttgaccaaatttatcaatttaatcaatatcctatgcaggagtttttc
aatcaattttcttttctaaaagaagaaattgaacgatataaaaaaatggattacaccatt
attctgcagtctagcaattcaatgggaagtaaaacattggaggatgttttagaggaatac
cagattaaattggattccagagataagtcaagtatttgtcaagaatctgtaaacttaatc
gagggtaatctcagacatggttttcattttgtagatgaaaagattttattgattactgaa
catgagatttttcaaaagaaattaaaacgtcgttttcgcagacaacatgtttcaaatgca
gagcgcctaaaagattataatgaacttgaaaagggggattacgttgttcaccatattcat
gggattggtcaatatctaggaattgaaaccattgaaattaaggggattcaccgtgattat
gtcagtgtccagtatcaaaatggggatcaaatctccataccagtggaacagattcatcta
ctgtccaaatatatttcaagtgatgggaaagctcctaaactcaataaattaaatgacggt
cattttaaaaaggccaagcaaaaagttaagaaccaggtagaggatatagctgatgattta
atcaaactctattctgaacgcagtcagttgaagggctttgctttctcagccgatgatgaa
gagcaagatacttttgatgatgccttcccttatgttgaaacggatgatcaacttcgtagt
atcgaggaaatcaagagagatatgcaagattctcagccaatggatcgacttttagttggg
gatgttggttttggaaagactgaagttgctatgcgtgcagcctttaaggcagtcaatgat
cacaaacaggttgtcgtcttagttccgacgacggttttagcgcaacagcactatacaaat
tttaaggaacgattccaaaattttgcagttaatattgatgtgttgagtcgctttagaagt
aaaaaagagcagactgaaacacttgaaaaattgaaaaatggtcaagtcgatattttgatt
ggaacacatcgtgttttgtcaaaagatgttgtgtttgctgatttgggcttgatgattatt
gatgaggaacagcgatttggtgtcaagcataaggaaaccttgaaagaactgaagaaacaa
gtggatgtcctaaccttgacagctactccaatccctcgtacccttcatatgtctatgctg
ggaatcagagatttgtctgttattgaaactccgccgactaatcgttatccagtgcaaacc
tatgttttagaaaagaatgatagtgtcattcgtgatgctgtcttacgtgaaatggagcgt
ggaggtcaagtttactacctttacaataaagttgacacgattgaccagaaggtttcagaa
ttacaggagttgattccagaggcttcgattggttacgttcatggtagaatgagtgaaata
cagttggaaaatactctactagactttattgagggacaatacgatattttggtgacgact
accattattgagacaggggtggacattccaaatgctaatactttatttattgagaatgcg
gatcatatgggcttgtcaaccttgtatcagttaagaggaagagtcggtcgtagtaatcgt
attgcttatgcctatctcatgtatcgtccagaaaaatcaatcagtgaagtctctgagaag
agattagaagcgattaaaggatttacagaattgggatccggatttaagattgctatgcga
gatctttcgattcgtggagcaggaaatctcctaggaaaatcccagtctggtttcattgat
tctgttggttttgaattgtattcgcagttattagaggaagctattgctaaacgaaacggt
aatgctaacactaacacaagaaccaaagggaatgctgagttgattttgcaaattgatgcc
tatcttcctgatacttatatttctgatcaacgacataagattgaaatttacaagaaaatt
cgtcaaattgacaaccgtgtcaattatgaagagttacaagaggagttgatagaccgtttt
ggagaatacccagatgtagtagcctatcttttagagattggtttggtcaaatcatacttg
gacaaggtctttgttcaacgtgtggaaagaaaagataataaagttacagttcaatttgaa
aaagtcactcaacgactgtttttagctcaagattattttaaatctttatccgcaacgaac
ttaaaagtaggcatcgctgagaataagggatcaatggagcttgtatttgatgtccgaaat
aagaaagattatgaaattttagaaggtctgctgatttttggagaaagtttattagagata
aaagagtctaagaaagaaaattccatttga
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