Sphingomonas panacis: AWL63_02190
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Entry
AWL63_02190 CDS
T04760
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
span
Sphingomonas panacis
Pathway
span03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
span00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWL63_02190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
span03019
]
AWL63_02190
03400 DNA repair and recombination proteins [BR:
span03400
]
AWL63_02190
Enzymes [BR:
span01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWL63_02190
Messenger RNA biogenesis [BR:
span03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWL63_02190
DNA repair and recombination proteins [BR:
span03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AWL63_02190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
RQC
Helicase_C
RecQ_Zn_bind
ResIII
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
AOH82964
UniProt:
A0A1B3Z6A7
LinkDB
All DBs
Position
complement(495731..497488)
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AA seq
585 aa
AA seq
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MIDPLPILQSTFGFPGFRGVQEQVVSRVLRAENTLAVMPTGAGKSLCYQLPAVALDGTCI
VVSPLIALMHDQLRAATAIGIRAATLTSVDTDQMETIARFRRGELDLLYVAPERASNESF
RNLLSQSPLALFAIDEAHCVSEWGHDFRPDYRLLRTMLDAFPDVPRLALTATADAHTRAD
ILEQLGIPHDGMIVAGFDRPNIQYRISPKDNITRQIADIVAEQPGPGIVYAQTRKGVEQL
AERLAATGRKVRPYHAGLDPAVRARNQADFVASEDMVIVATVAFGMGIDKPDVRFVAHAG
LPKSIEGYYQETGRAGRDGDPSIAHLFWGAEDFAKARQRIGEVEPHRQPGERARLTALGA
LVETPTCRRQILLRHFGDPAPDNCGNCDNCLNPPGAIDATEVARKFLSAVFRTGQSFGVG
YIESILTGQSTERSLMNGHEALGVFGIASSPEEAALIKPVSRALLLRDALRTNDFGGLEF
GPEARGILKGETTVSLLVQPKRERRRRGAAAENPAGDPLFEALRAKRRELAQAAQVPPYV
IFHDSVLREMATLKPTSRAALAHITGIGARKLETYGDAFLEVLRG
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
gtgattgatccacttcccatcctccaatccaccttcggcttccccggctttcgcggcgtg
caggaacaggtcgtcagtcgcgtgctgcgtgccgagaacacgctcgcggtgatgccgacc
ggcgcgggcaagtcgctgtgctatcagttgcccgcggtcgcgctcgacggcacctgcatc
gtcgtctcgccgctgatcgcgctgatgcacgaccagcttcgcgccgccaccgcgatcggc
atccgcgcggcgaccctcacttcggtcgataccgaccagatggaaacgatcgcgcgcttc
cggcgtggcgagctcgacctgctctatgtcgcgcccgaacgcgcctcgaacgaatcgttc
cgcaacctgctcagccagtccccgctcgccttgttcgcgatcgacgaggcgcactgcgtc
tccgaatggggacatgatttccgcccggactatcgcctgctgcggaccatgctcgatgcg
ttcccggacgtgccgcgcctagcgctgaccgcgaccgccgatgcgcatacccgcgccgac
atcctcgaacagctcggcatcccgcacgacggcatgatcgtggcggggttcgatcggccc
aacatccagtatcggatcagccccaaggacaatatcacccgccagatcgccgatatcgtc
gccgagcagcccggaccgggcatcgtctatgcgcagacccgcaaaggcgtcgaacaactc
gccgagcggctcgccgcgactgggcgcaaggtgcggccctatcatgccggtctcgatccc
gccgtgcgcgcgcgcaatcaggccgatttcgtcgcgagcgaggacatggtgatcgtcgcg
acggtcgcgttcggcatgggcatcgacaagcccgacgtccgcttcgtggcgcacgccggc
ctgcccaagtcgatcgagggctattatcaggagaccggccgcgccggccgtgacggcgac
ccgtcgatcgcccatctgttctggggcgcggaggatttcgccaaggcgcgccagcgcatc
ggcgaggtcgagccgcaccgtcagcccggcgagcgcgctcgtctcaccgcgctcggcgcg
ctggtcgaaacgccgacctgccgccgccagatcctgctccgccatttcggcgacccggcg
cccgataactgcggcaattgcgacaattgcctcaacccgcccggcgcgatcgatgcgacg
gaggtggcgaggaaattcctctccgcggtctttcgcacgggccagagctttggcgttggc
tatatcgaaagcatcctgaccggccagtcgactgagcgcagcctgatgaacgggcacgag
gcgctcggcgtgttcggcatcgcctcctcgcctgaggaagccgcgctcatcaagcccgtc
tcgcgcgcgctgctgctgcgcgacgcgcttcgcaccaacgatttcggtggtctcgaattc
ggccccgaggcgcgcggcatcctcaaaggcgagaccaccgtctcgctgctcgtccagccc
aagcgcgagcggcgccggcgcggtgccgctgccgaaaatccggccggcgatccgctgttc
gaggcgttgcgcgcgaagcggcgcgagctggcgcaggcggcgcaggtgccgccctacgtc
atcttccacgattcggtgctgcgcgagatggcgacgctcaaacccaccagccgcgccgcg
ctcgcgcacatcaccggcatcggcgcgcgcaagctggagacctatggcgacgccttcctc
gaggtgttacgcggatga
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