Sphingomonas panacis: AWL63_02400
Help
Entry
AWL63_02400 CDS
T04760
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
span
Sphingomonas panacis
Pathway
span03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
span00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWL63_02400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
span03019
]
AWL63_02400
Enzymes [BR:
span01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWL63_02400
Messenger RNA biogenesis [BR:
span03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWL63_02400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOH83001
UniProt:
A0A1B3Z6F3
LinkDB
All DBs
Position
complement(532149..533549)
Genome browser
AA seq
466 aa
AA seq
DB search
MTFAKLGLAEPLVRALEAKGYSTPTPIQQQSIPMLLEGRDLLGIAQTGTGKTAAFVLPSI
QNLIANDKRILPTHCRMLVLAPTRELASQIADSARDYGKFSKMSVATVFGGVSINKNRQD
MSRGVDILVATPGRLLDLIEQRFVSLATLEILVLDEADQMLDLGFIHALKKIVRMLPKQR
QTLFFSATMPAAIRDLADQFLTDPATVKVAPVASTAERVDQFITLVNQSEKQALLTIHLR
NPEIERCLVFTRTKHGADRVVKLLAANGIASNAIHGNKSQPQRERALGEFKSGKVKVLIA
TDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGASGVAISFCADDEKPFLRDIE
RLTKVKLTPLPLPADFTAEQARIKAARPAGSDTPERRIDDSGRHRQGPRATHSARPTGER
PAGGAGRPAGQGRPGGQGRPAGGGGRPGGPRRQSSGGGGRRSPAAG
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgactttcgccaaactcggccttgccgaaccgctcgtccgcgcgctcgaagccaagggc
tattcgacccccacgccgatccagcagcagtcgatcccgatgctgctcgaaggccgcgat
ctgctcggcattgcgcagaccggcaccggcaagaccgccgctttcgtgcttccgtcgatc
cagaacctgatcgccaacgacaagcgtatcctgccgacgcattgccgcatgctcgtgctc
gcgccgacgcgcgagctcgccagccagatcgccgacagcgcgcgcgattacggcaaattc
tccaagatgagcgtcgccaccgtgttcggcggcgtcagcatcaacaagaaccgccaggac
atgagccgcggcgtcgatatcctcgtcgccacgccggggcgtctgcttgatctgatcgag
cagcgcttcgtcagcctcgcgacgctggagatcctcgtcctcgacgaggccgaccagatg
ctcgacctcggcttcatccacgcgctcaagaagatcgtgcggatgctgcccaagcagcgc
cagaccctgttcttctcggcgacgatgcccgccgcgatccgcgatctcgccgatcagttc
ctgaccgatcccgccaccgtcaaggtcgcgccggtcgcatcgaccgccgagcgcgtcgac
cagttcatcacgttggtgaaccagtcggagaagcaggcgctgctgacgatccatctgcgc
aacccggagatcgagcgttgcctcgtcttcacgcgcaccaagcacggcgcagaccgggtc
gtgaaactgctcgccgccaacggcatcgcgtccaacgcgatccacggcaacaagagccag
ccgcagcgcgaacgtgcgctcggcgagttcaagtcgggcaaggtcaaggtgctgatcgcg
accgacatcgccgcgcgcggcatcgacgtgtcgggcgtgagccacgtcttcaacttcgaa
ctgcccaacgtgcctgagcagtacgtccaccgcatcggccgcaccgcgcgcgccggcgcg
tcgggcgtggcgatcagcttctgcgcggacgatgagaagccgttcctgcgcgacatcgag
cggctgaccaaggtcaagctgacgccgctgccgctgccggccgatttcaccgccgagcag
gcccgcatcaaggcggcgcggccggccggatcggacacgcccgagcgtcgtatcgacgat
tcggggcgccaccgtcagggtccgcgcgccacgcattcggcacgcccgaccggcgagcgg
ccggcgggtggcgctggccgtcccgctggtcagggccgccccggcggtcagggtcgtccg
gccggcggtggcggtcgccccggtggcccgcgtcgccagtcgtcaggtggcggcggccgg
cgttcgcccgccgcgggctga
DBGET
integrated database retrieval system