Sphingomonas panacis: AWL63_04980
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Entry
AWL63_04980 CDS
T04760
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
span
Sphingomonas panacis
Pathway
span03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
span00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWL63_04980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
span03021
]
AWL63_04980
03019 Messenger RNA biogenesis [BR:
span03019
]
AWL63_04980
Transcription machinery [BR:
span03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AWL63_04980
Messenger RNA biogenesis [BR:
span03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AWL63_04980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
Spore_III_AA
AAA_22
S1CSD-TOTE-2
GpA_ATPase
NACHT
AAA_25
AAA_14
Fungal_virus_P2_C
AAA
MACPF_b-prism
Motif
Other DBs
NCBI-ProteinID:
AOH83417
UniProt:
A0A1B3Z7L5
LinkDB
All DBs
Position
complement(1138209..1139465)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKNKKPAELVEMAEALGIESASTLRKQDLMFAILKVQAENGDQIMGLGTIEVLPD
GFGFLRSPEANYLAGPDDIYISPNQVRKFGLRTGDTVEAEIRGPKDGERYFALTKLISVN
FDDPDAVRHRVNFDNLTPLYPEQKLTLDPSDPTMKDKSARVIDIVSPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITDNHPEVFLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDQSKLSKMWVLRRILMQMGTIDSMEFLLDKMKNSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctcaaagacctcaagaacaaaaagcccgccgaactcgtcgagatggcggaagcg
ctcggcatcgagagcgcctcgacgctgcgcaagcaggatctgatgttcgcgatcttgaag
gtccaggccgagaacggtgaccagatcatggggcttggcacgatcgaggtgctgcccgac
ggcttcggcttcctgcgcagccccgaggcgaattacctcgccggcccggacgacatctac
atctcgccaaatcaggtgcggaagttcggcctgcggaccggcgatacggtcgaggccgag
atccgcggccccaaggacggcgagcgttatttcgcgctgaccaagctcatctcggtcaat
ttcgacgatcccgatgcggtgcgtcaccgcgtcaacttcgacaacctcacgccgctgtac
ccggagcaaaagctcacgctggatccgagcgatccgacgatgaaggacaagtcggcgcga
gtcatcgacatcgtctcgccgcagggcaagggccagcgcacgctgatcgtcgcgccgccg
cgcgtcggcaagacggtgatgctccagaacatcgccaaggcgatcaccgacaatcacccc
gaggtgttcctgatcgtgctgctcatcgacgagcggcccgaggaagtcaccgacatgcag
cggtcggtgaagggtgaggtggtctcctcgaccttcgacgagcccgccacgcgccacgtc
caggtcgcagaaatggtcatcgaaaaggccaagcgtcttgtcgagcacaagaaggacgtg
gtgatcctgctcgactcgatcacccgcctcggccgcgcctacaacacggtcgttccctcg
tcgggcaaagtgctgaccggcggcgtcgatgccaatgcgctccagcggccgaagcgcttc
ttcggcgcagcgcgcaacatcgaggagggcggttcgctctcgatcatcgccaccgcgctg
atcgataccggcagccgcatggacgaggtgatcttcgaagagttcaagggcaccggcaac
tccgaaatcgtgctcgaccgcaaggtcgccgacaagcgcatcttcccggcgctcgacgtc
ggcaaatcgggcacgcgcaaggaagagctgctggtcgatcagagcaagctttccaagatg
tgggtgctgcgccgaatcctcatgcagatgggcacgatcgattcgatggagttcctgctc
gacaagatgaagaattcgaagaccaacgaagatttcttcgacagcatgaatcaatag
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