Sphingomonas panacis: AWL63_06070
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Entry
AWL63_06070 CDS
T04760
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
span
Sphingomonas panacis
Pathway
span03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
span00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWL63_06070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
span03019
]
AWL63_06070
03009 Ribosome biogenesis [BR:
span03009
]
AWL63_06070
Messenger RNA biogenesis [BR:
span03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWL63_06070
Ribosome biogenesis [BR:
span03009
]
Prokaryotic type
rRNA helicases
AWL63_06070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
CofD
Pro_Al_protease
Motif
Other DBs
NCBI-ProteinID:
AOH83602
UniProt:
A0A1B3Z849
LinkDB
All DBs
Position
1372420..1374120
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AA seq
566 aa
AA seq
DB search
MPFTHLPALLGEALTARGYAAPTPVQAAVIAPEAEGRDLIVSAQTGSGKTVAFGLAIAPQ
LLTEDGTLPPARAPLALAIAPTRELALQVSRELEWLYGKAGARISTCVGGMDASRERRSL
SHGAHIVVGTPGRLRDHIERGALDLSQLKAAILDEADEMLDMGFREDLEQILDATPDGRR
TLMFSATMPKSIVALAKRYQKDALRITTVGEDRGHGDISYQAVTVAPPDIENAVVNLLRL
HEAETAILFCATRDNVRHLHAGLIERGFSAVALSGEHSQNERNAALQALRDQRARVCVAT
DVAARGIDLPTVTLVVHVELPRDAETLQHRSGRTGRAGKKGTAVLIVPYQRKRRVEMMLR
GARIAVEWLPVPSVDDIRKADRERLMTQLLEPVEVDEDDRALAAKLLEQKTPEEIAAALV
RSYRARMPAPEEMLAEGPSERAPGKEHHREGFDDVVWFRMDIGRRENADPRWILPLICRR
GHITKNEVGAIRIAANETAFQIPRGLASKFLASVKRTQGEEAEGGVQFEQLANAPQEAPR
GPRRANGPAPVRHAARPTLRSKRPER
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgccttttactcaccttcctgcgcttcttggcgaagcgctcaccgcacgcgggtatgcc
gcgccgaccccagtccaggccgccgtgatcgcgcccgaagccgaggggcgcgacctgatc
gtctccgcgcagaccggctccggcaagaccgtcgcgttcggcctcgccatcgccccgcag
ttgctgaccgaggacggcacgctgccaccggcacgcgcgccgctcgcgctcgccatcgcg
ccgactcgcgaactcgcgttgcaggtcagccgcgaactcgaatggctgtacggcaaggcc
ggcgcgcgcatctcgacctgcgtcggcggcatggacgcctcgcgcgaacgccgttcgctc
agccacggcgcgcatatcgtcgtcggcacgccgggccgcctgcgcgaccatatcgaacgc
ggcgcgctcgatctgtcgcagctcaaggctgctatcctcgacgaagccgacgagatgctc
gacatgggcttccgcgaggatctcgaacagatcctcgacgcgactcccgatggccgtcgc
acgctgatgttctcggcgacgatgcccaagtcgatcgtcgcgctcgccaagcgctaccag
aaagatgcgcttcgcatcaccacggtcggcgaggatcgcgggcatggcgacatcagctat
caggcggtcacggtcgcgccgcccgacatcgagaatgccgtcgtcaacctgcttcgcctc
cacgaagccgagaccgcgatcctgttctgcgcgactcgcgacaacgtccgccatctccac
gccgggctgatcgagcgcggcttctcggcggtggcgctgtcaggcgagcatagccagaat
gagcgcaacgccgcgctccaggcgctgcgcgaccagcgcgcgcgagtctgtgtcgccacc
gacgtggcggcgcgcggcatcgatctgccgaccgtcacgctggtcgtccatgtcgagctg
ccgcgcgatgccgagacgctccagcaccgctcgggccgtactggtcgcgccggcaagaag
ggcaccgccgtgctgatcgtgccgtatcagcgcaagcgccgggtcgagatgatgctgcgc
ggcgcgcgcatcgcggtcgaatggctgccggtgccgagcgtcgacgacatccgcaaggcc
gatcgcgagcggctgatgacccagcttctcgaacccgtggaggtcgacgaggacgatcgc
gcgctcgccgccaagctgctcgaacagaagacgcccgaggaaatcgccgccgctttggtg
cgctcgtaccgcgcgcgcatgcccgcgcctgaggagatgctcgccgaaggcccatcggag
cgtgcgcccggcaaggagcatcaccgcgaaggctttgacgacgtggtgtggttccgcatg
gacatcggccgccgcgagaacgccgatccgcgctggatcctgccgctgatctgccggcgc
gggcacatcaccaagaacgaggtcggtgcgatccgcatcgccgccaacgagaccgcgttc
cagattccgcgcgggctggcgagcaagttcctcgcctcggtcaagcgcacgcagggcgag
gaagccgagggcggtgttcagttcgagcagctcgccaacgcgccgcaggaggcgccgcgc
gggccgcgccgtgccaacggcccggcgccggtacgccacgccgcccgtccgacactgcgc
agcaagcggccggaacgctga
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