Sphingomonas panacis: AWL63_09100
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Entry
AWL63_09100 CDS
T04760
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
span
Sphingomonas panacis
Pathway
span03410
Base excision repair
span03430
Mismatch repair
span03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
span00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AWL63_09100
03430 Mismatch repair
AWL63_09100
03440 Homologous recombination
AWL63_09100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
span03400
]
AWL63_09100
DNA repair and recombination proteins [BR:
span03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AWL63_09100
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AWL63_09100
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWL63_09100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Nitro_FeMo-Co
Motif
Other DBs
NCBI-ProteinID:
AOH84097
UniProt:
A0A1B3Z9L8
LinkDB
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Position
complement(2028635..2030401)
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AA seq
588 aa
AA seq
DB search
MTPTVLNITRSILGQPWRWRMLAADARDPGFAPDDLVTHLLLARGCPRDALDAHRAPSIR
AFMPDPSIFQDMDRAAARLADAVQAGEQVTIFGDYDVDGATSAALMILLLRDLGLEARAY
IPDRLMEGYGPSGEALVRLAQEGASLIVTVDCGAQAFEALEMARVAGVDVIVVDHHKCAT
ALPHAHALVNPNRLDEDEGAAHGHLAAVGVAFLLGAALVRTLRARGHFADRAEPRLLDLL
DLVALGTVADVAQLKGLNRAFVAQGLKVMGQRRNIGLGALADAARMKRAAVCSDLGFALG
PRINAGGRVGKSDLGVRLLTTRDPAEAQAIAAELDRLNEDRRAIEAQVQEAAEEIAVHKG
NRAVMVVAGRGWHPGVIGIVAGRLKEKYGRPAIVIALDDAGVGKGSGRSITGVDLGAGVL
AAKDSGLLVAGGGHAMAAGLTIAEDRLEAFGDFLEERLEAAVTRSIGDRALLVDALLAPG
GVNPALVESMEAGGPYGMGWPAPRIAAGPVRIIKADVVGNGHVRAIASGDDGRPLKTVAF
RAADTLLGQALLGAPPHRKLWLAGRAKIDDWGAKPAAELHLDDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaccccgaccgtcctcaacatcacccgatcgatcctcggccagccgtggcgctggcgg
atgctggcggcggacgcgcgcgatcccggtttcgcgcccgacgatctcgtcacgcacctg
ctgctcgcgcgcggctgcccgcgcgacgcgctcgacgcgcaccgggcaccgagcatccgc
gcgttcatgcccgatccgtcgatctttcaggacatggaccgcgccgccgcgcgactcgcc
gatgcggtacaggctggcgagcaggtcacgatcttcggcgactatgacgtcgatggcgcg
acctcggccgcgctgatgatcctgctgctgcgcgatctcggactggaggcgcgtgcctat
atccccgaccggctgatggagggctatggcccctcgggcgaggccttggtgcggttggcg
caggaaggcgcgagcctgatcgtgacggtggattgcggcgcgcaggcgttcgaggcgctg
gagatggcgcgtgtggccggagtcgacgtgatcgtggtcgatcatcacaaatgcgcgacc
gcgctgccgcacgcgcacgccttggtgaacccgaaccggctcgacgaggacgaaggcgcc
gcgcacgggcacctcgcggcggtgggggtggcgttcctgcttggcgcggcgctggtacgg
acgctgcgcgcgcgcggccattttgcggaccgggctgagccgcggctgctcgacctgctc
gatctggtcgcgctcggcacggtcgcggacgtggcgcagttgaaggggcttaaccgcgcg
ttcgtggcgcagggtctcaaggtgatggggcagcgccgcaacatcggcctcggcgcgctg
gcggacgcggcgcggatgaagcgcgcggcggtgtgttccgatctcggcttcgcgctgggg
ccgagaatcaacgccggcgggcgagtcggcaagtccgatctcggcgtgcggctgctgacc
acgcgcgatcccgccgaagcgcaggcgatcgcggccgagctcgaccggctgaacgaggac
cgccgcgcgatcgaggcgcaggtacaggaagcggccgaggagatcgcggtccacaagggc
aaccgcgcggtgatggtcgtcgccgggcgcggctggcaccccggcgtgatcggcatcgtc
gcggggcggctcaaggagaaatacggccggcccgcgatcgtcatcgcgttggatgacgca
ggcgtcggcaaggggtcgggccggtcgatcaccggagtcgatctcggtgctggcgtgctg
gcggcgaaggacagcgggctgctggtcgcgggcggcgggcatgcgatggcagcgggtctg
acgatcgcggaagatcggcttgaggcgttcggggatttcctggaggagcgactggaagca
gcggtgacgcgctcgatcggcgaccgcgcgctgctggtcgatgcactgctcgcgccgggc
ggggtcaaccccgcgctggtcgagtcgatggaagccggtggcccctacggcatgggctgg
cccgcgccgcgaatcgccgccgggccggtgcggatcatcaaggccgatgtggtcggcaac
ggccacgtccgcgcgatcgccagtggcgacgacggccgccccttgaaaaccgtcgccttc
cgcgccgccgacacattattggggcaagcgctgctgggggcgcccccgcaccgcaagcta
tggctcgccggacgcgccaagatcgacgactggggcgcgaagcctgcagcggagttgcac
ctcgacgatgcggcctgggccgattag
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