Sphingomonas panacis: AWL63_22055
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Entry
AWL63_22055 CDS
T04760
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
span
Sphingomonas panacis
Pathway
span03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
span00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWL63_22055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
span03019
]
AWL63_22055
Enzymes [BR:
span01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWL63_22055
Messenger RNA biogenesis [BR:
span03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWL63_22055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_11
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
AOH86245
UniProt:
A0A1B3ZFN4
LinkDB
All DBs
Position
4826182..4827462
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AA seq
426 aa
AA seq
DB search
MNLTFADLSLAPFLLQALAEEGYARPTPIQAQSIPMLLQGRDMLGMAQTGTGKTAAFALP
LLHRLAADPRPAPKGGARVLVLAPTRELVSQIAVGFEKFGRHLKPSVTTIFGGVSQFHQV
NALKAGVDIIVATPGRLLDLIEQRLCDLSALEALVLDEADQMLDMGFAKPIERIVAALPT
DRHTLLFSATMPKSITALADSLLRDPANVEIAPPSTTVDRIEQSVMFLDAANKKAALLAL
LQTPEMGQAVVFTLQKNIANEVCAFISEAGITAEALHGNKSQGQRERALDAFRAGDVQVL
VATDIAARGIDVDTVTHVFNHDLPSLPESYVHRIGRTGRAGRSGFAITLCDAEQRAWLHD
VERTIGRTLTVKDDHHWHCEVARHSTKRAPVLGGGPVKQVKPPKERVRKVWTEEEKRAAR
EAARAA
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactttcgccgatctctctctggcgccatttttgctgcaggcgctggctgaa
gaagggtatgccagaccgacaccgatccaggctcaatccatcccgatgctgttgcagggc
cgcgacatgctcggcatggcgcagaccggcacgggcaagactgcggccttcgcgctgccg
ctgttgcatcgcctcgccgccgatcctcgtcccgcgcccaaggggggtgcccgcgtcctc
gttcttgcgccgacgcgcgaactcgtgtcgcagatcgccgtcggcttcgagaaattcggc
cgccatctgaagcccagcgtgaccacgatcttcggcggcgtaagccagttccatcaggtc
aatgcgctcaaggctggcgtcgacatcatcgtggcgacgccgggtcgcttgctggacctg
atcgagcagcgcctttgcgacttgtccgcacttgaggcgctggtcctcgatgaggccgat
cagatgctcgatatgggctttgccaagccgatcgaacgcattgtcgccgcgctgcctacg
gatcggcacacattgctgttttcggcaacgatgcccaaatcgataacggcgctggccgac
agccttttgcgcgatccggccaatgtcgagatcgccccgccatcgaccaccgtggaccgg
atcgaacagtccgtgatgttccttgacgccgccaacaagaaggcggcgctcctggcattg
ttgcaaacgcccgagatgggtcaggccgtcgtcttcacgctgcaaaagaatattgccaat
gaagtctgcgccttcatcagcgaggcgggcatcaccgccgaggccttgcacggcaacaag
tcccaggggcagcgggaacgcgcgctcgacgcctttcgcgccggggatgtgcaggttctc
gtggcgacggatatcgcggcgcgcggcatcgatgtcgacacggtgacgcatgtcttcaac
cacgatctgcccagcctgccggaaagttatgtccaccggatcggccggaccggccgtgct
gggcgaagcggatttgcgatcacgctgtgcgacgccgaacagcgcgcctggctgcatgac
gtggagcggacaatcggtcgcaccttgacggtgaaggacgatcatcattggcattgcgaa
gtggcgcgacattcgaccaaacgcgcgcctgtactgggcggcgggccggtcaagcaggtc
aagccgcccaaagagcgcgtgcgcaaggtctggactgaggaagaaaagcgcgccgcgcga
gaggcagcaagggccgcctga
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