Saccharomyces paradoxus: SPAR_B00800
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Entry
SPAR_B00800 CDS
T08193
Name
(RefSeq) Lsm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
spao
Saccharomyces paradoxus
Pathway
spao03018
RNA degradation
spao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SPAR_B00800
09123 Folding, sorting and degradation
03018 RNA degradation
SPAR_B00800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_B00800
03041 Spliceosome [BR:
spao03041
]
SPAR_B00800
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPAR_B00800
mRNA degradation factors
5'-3' decay
Lsm complex
SPAR_B00800
Spliceosome [BR:
spao03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SPAR_B00800
Complex C
U2 snRNP components
SPAR_B00800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
54628764
NCBI-ProteinID:
XP_033764573
UniProt:
A0A8B8ULE0
LinkDB
All DBs
Position
II:190686..191104
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AA seq
95 aa
AA seq
DB search
MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI
FIRGSTVRYVYLNKNMVDTNLLQDATRREVMTERK
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgcttttcttctcttttttcaagactttagttgaccaagaagtggtcgtagagttaaaa
aatgacatcgaaataaaaggtaccctacaatctgtcgaccaatttttgaacctaaaacta
gacaacatatcatgcacagatgaaaaaaaatatccgcacttaggttccgtaaggaatatc
tttataagaggttccacagtcaggtacgtctatttgaataagaatatggtagatacgaat
ttactgcaagacgctaccagaagggaggtaatgactgaaagaaaataa
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