KEGG   Saccharomyces paradoxus: SPAR_C01240
Entry
SPAR_C01240       CDS       T08193                                 
Name
(RefSeq) Pat1
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
spao  Saccharomyces paradoxus
Pathway
spao03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPAR_C01240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_C01240
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     SPAR_C01240
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     SPAR_C01240
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 54629215
NCBI-ProteinID: XP_033765011
LinkDB
Position
III:complement(<277848..>280310)
AA seq 820 aa
MVNEKNMLTLKTGKVVPGKKQQQEASTMSFFGLENNSNGRDGPLDFEESYRGYGEHELEE
NDYLNDETFGDNVQVGTDFDFGNPHSTGSSNAIGGNSVGTTARSYVAATAEGISGPRSNG
NAAAAPLDLKPMESLWSTAPPPAMAPSPQGTMAPAPQQMGPPQPILSMQDLERQQRQMQQ
QFMNFHAMGHPQGLPQGPPQQQFPMQPASGQPGPSQFAPPPPPPGVNVNINQMPMGPVQV
PVQSSPSPIGMANAPSPGPVVGTGKMPLQGGRRSKRDLSPEEQRRLQIRHAKVEKILKYS
GLMTPRDKDFITRYQLSQIVTEDPYNEDFYFQVYKIIQRGGITSESNKGLIARAYLEHSG
HRLGGRYKRTDIALQRMQSQVEKAVTVAKERPSKLKDQQAAAGNSNQDNKQANTVLGKIS
STLNSKNPRRQLQIPRQQPSDPDALKDVTDSLTNVDLTSPGSSSAGSSAAAAASKQRRRS
SYAFNNGNGATNLNKSGGKKFILELIETVYEEILDLEANLRNGQQTDSTAMWDALHIDDC
SYDVNPFISMLSFDKGIKIMPRIFNFLDKQQKLKILQKIFNELSHLQIIILSSYKTTPKP
TLTQLKKVDLFQMIILKIIVSFLSNNSNFIEIMGLLLQLIKNNNVSFLTTSKIGLNLITI
LISRAALIKQDSSRSNILSSPEISTWNEIYDKLFTSLESKIQLIFPPREYNDHIMYLQND
KFMDEAYIWQFLASLALSGKLNHQRIIIDEVRDEIFATINEAETLQKKEKELSVLPQRSQ
ELDAELKSIIYNKEKLYQDLNLFLNVMGLVYRDGEISELK
NT seq 2463 nt   +upstreamnt  +downstreamnt
atggtgaatgaaaagaacatgttaaccttgaagacaggcaaggttgtaccaggaaagaaa
cagcagcaagaagcatcaacaatgtctttctttgggttagaaaataacagtaatgggcgg
gatggtcctctggatttcgaagagagttacaggggctacggtgagcacgaactcgaggag
aacgactatttgaacgacgaaacgtttggtgataatgttcaggttggtacggactttgat
tttggaaatcctcacagcactggcagcagcaacgcaattggtggcaacagtgtcggtact
actgctagatcatatgttgcagctactgcagaaggaattagcggccctaggagcaatgga
aacgccgcagcagcgcctctggacttgaagccaatggaatctttgtggtctactgcacca
cctccagcaatggcgccatcacctcaaggcacgatggctccagctccgcagcaaatgggc
cccccacagccgatcttatccatgcaagacttggaaaggcaacaacgtcaaatgcagcaa
cagtttatgaacttccacgccatgggtcatccacagggtctcccacagggcccccctcag
cagcaatttccgatgcagcctgcgtcgggtcaaccaggtccctcacaatttgcacctcca
cctccacctccaggtgtcaatgtgaatattaatcaaatgcccatgggtcctgtacaagtt
ccagtgcaatcttcaccttcgcccatcggtatggccaatgctccttctccaggacctgtg
gtgggtacaggtaaaatgcctctgcaaggtggacgcagatcgaagagagacttgtcgcct
gaagagcaaagacgtttgcagattcgccacgccaaagtggaaaaaatcttgaaatactca
ggtttaatgactcctcgtgataaggacttcatcaccagatatcagttatctcaaattgtc
accgaggacccttacaatgaggatttctactttcaagtctacaagattattcaaagaggc
ggtatcacctctgaatccaacaagggcttgattgcaagagcgtatttggaacattctggg
cacagactcggtggtcgctataagagaaccgacattgccctgcagagaatgcaaagtcaa
gtggaaaaggctgttaccgtagctaaggaaagaccttctaagttgaaggatcaacaagca
gctgctggtaactccaatcaggacaataagcaagcaaacactgttctgggtaagatttct
tctactttaaacagcaagaatccaagaagacagctacagattcccagacaacagccttct
gaccctgatgcactgaaagacgtcactgactccttgaccaacgtggatttgacctctccg
gggtcctcttcagcaggctcctctgcagcagctgcagcttctaaacaaagaagaagatct
tcgtatgcgttcaacaacggcaatggtgccacaaacttgaacaagtcaggaggaaagaaa
ttcatcttggagttaattgaaacagtttacgaagagattttagacttggaggccaatttg
aggaatggccaacaaactgacagtactgcgatgtgggatgcccttcacatcgatgattgt
tcatatgacgtaaaccccttcatctcgatgctatcatttgacaaaggtatcaagattatg
cccagaattttcaatttcttggataaacagcaaaaattgaagatcctgcaaaaaatcttc
aacgaattatcacatttgcagatcattatattgagttcttacaagaccacaccaaaacca
acgttgacacagttgaagaaagtcgatctcttccaaatgatcatattaaaaatcatcgtt
tcgttcttgtctaataactccaattttatcgaaattatgggtcttttgttgcagttaatt
aaaaataacaacgtttcattcttgaccacctccaaaattggtctaaatttgataactatt
ttgatttctcgtgccgcattaatcaagcaagattcatcaagatctaatattctttcatct
cctgaaatctccacatggaatgaaatttatgataaactatttacttcattggaaagtaag
attcagctgatcttccctccaagagaatataatgatcacatcatgtacctacaaaatgac
aagtttatggatgaagcgtatatttggcagttcctagctagtttagcactaagtgggaaa
ttaaaccaccagagaatcattatcgatgaagtacgtgatgagatctttgccactattaac
gaggcagaaactttgcaaaaaaaagaaaaggagctgagtgtattacctcaaaggtctcaa
gaattagatgcagaattaaaatcgattatttataataaagagaaactataccaagatttg
aatttgttcctaaacgttatggggttggtgtaccgcgatggtgaaatttcagaactaaaa
taa

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