Saccharomyces paradoxus: SPAR_C01240
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Entry
SPAR_C01240 CDS
T08193
Name
(RefSeq) Pat1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
spao
Saccharomyces paradoxus
Pathway
spao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPAR_C01240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_C01240
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPAR_C01240
mRNA degradation factors
5'-3' decay
Decapping complex
SPAR_C01240
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
54629215
NCBI-ProteinID:
XP_033765011
LinkDB
All DBs
Position
III:complement(<277848..>280310)
Genome browser
AA seq
820 aa
AA seq
DB search
MVNEKNMLTLKTGKVVPGKKQQQEASTMSFFGLENNSNGRDGPLDFEESYRGYGEHELEE
NDYLNDETFGDNVQVGTDFDFGNPHSTGSSNAIGGNSVGTTARSYVAATAEGISGPRSNG
NAAAAPLDLKPMESLWSTAPPPAMAPSPQGTMAPAPQQMGPPQPILSMQDLERQQRQMQQ
QFMNFHAMGHPQGLPQGPPQQQFPMQPASGQPGPSQFAPPPPPPGVNVNINQMPMGPVQV
PVQSSPSPIGMANAPSPGPVVGTGKMPLQGGRRSKRDLSPEEQRRLQIRHAKVEKILKYS
GLMTPRDKDFITRYQLSQIVTEDPYNEDFYFQVYKIIQRGGITSESNKGLIARAYLEHSG
HRLGGRYKRTDIALQRMQSQVEKAVTVAKERPSKLKDQQAAAGNSNQDNKQANTVLGKIS
STLNSKNPRRQLQIPRQQPSDPDALKDVTDSLTNVDLTSPGSSSAGSSAAAAASKQRRRS
SYAFNNGNGATNLNKSGGKKFILELIETVYEEILDLEANLRNGQQTDSTAMWDALHIDDC
SYDVNPFISMLSFDKGIKIMPRIFNFLDKQQKLKILQKIFNELSHLQIIILSSYKTTPKP
TLTQLKKVDLFQMIILKIIVSFLSNNSNFIEIMGLLLQLIKNNNVSFLTTSKIGLNLITI
LISRAALIKQDSSRSNILSSPEISTWNEIYDKLFTSLESKIQLIFPPREYNDHIMYLQND
KFMDEAYIWQFLASLALSGKLNHQRIIIDEVRDEIFATINEAETLQKKEKELSVLPQRSQ
ELDAELKSIIYNKEKLYQDLNLFLNVMGLVYRDGEISELK
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgaaaagaacatgttaaccttgaagacaggcaaggttgtaccaggaaagaaa
cagcagcaagaagcatcaacaatgtctttctttgggttagaaaataacagtaatgggcgg
gatggtcctctggatttcgaagagagttacaggggctacggtgagcacgaactcgaggag
aacgactatttgaacgacgaaacgtttggtgataatgttcaggttggtacggactttgat
tttggaaatcctcacagcactggcagcagcaacgcaattggtggcaacagtgtcggtact
actgctagatcatatgttgcagctactgcagaaggaattagcggccctaggagcaatgga
aacgccgcagcagcgcctctggacttgaagccaatggaatctttgtggtctactgcacca
cctccagcaatggcgccatcacctcaaggcacgatggctccagctccgcagcaaatgggc
cccccacagccgatcttatccatgcaagacttggaaaggcaacaacgtcaaatgcagcaa
cagtttatgaacttccacgccatgggtcatccacagggtctcccacagggcccccctcag
cagcaatttccgatgcagcctgcgtcgggtcaaccaggtccctcacaatttgcacctcca
cctccacctccaggtgtcaatgtgaatattaatcaaatgcccatgggtcctgtacaagtt
ccagtgcaatcttcaccttcgcccatcggtatggccaatgctccttctccaggacctgtg
gtgggtacaggtaaaatgcctctgcaaggtggacgcagatcgaagagagacttgtcgcct
gaagagcaaagacgtttgcagattcgccacgccaaagtggaaaaaatcttgaaatactca
ggtttaatgactcctcgtgataaggacttcatcaccagatatcagttatctcaaattgtc
accgaggacccttacaatgaggatttctactttcaagtctacaagattattcaaagaggc
ggtatcacctctgaatccaacaagggcttgattgcaagagcgtatttggaacattctggg
cacagactcggtggtcgctataagagaaccgacattgccctgcagagaatgcaaagtcaa
gtggaaaaggctgttaccgtagctaaggaaagaccttctaagttgaaggatcaacaagca
gctgctggtaactccaatcaggacaataagcaagcaaacactgttctgggtaagatttct
tctactttaaacagcaagaatccaagaagacagctacagattcccagacaacagccttct
gaccctgatgcactgaaagacgtcactgactccttgaccaacgtggatttgacctctccg
gggtcctcttcagcaggctcctctgcagcagctgcagcttctaaacaaagaagaagatct
tcgtatgcgttcaacaacggcaatggtgccacaaacttgaacaagtcaggaggaaagaaa
ttcatcttggagttaattgaaacagtttacgaagagattttagacttggaggccaatttg
aggaatggccaacaaactgacagtactgcgatgtgggatgcccttcacatcgatgattgt
tcatatgacgtaaaccccttcatctcgatgctatcatttgacaaaggtatcaagattatg
cccagaattttcaatttcttggataaacagcaaaaattgaagatcctgcaaaaaatcttc
aacgaattatcacatttgcagatcattatattgagttcttacaagaccacaccaaaacca
acgttgacacagttgaagaaagtcgatctcttccaaatgatcatattaaaaatcatcgtt
tcgttcttgtctaataactccaattttatcgaaattatgggtcttttgttgcagttaatt
aaaaataacaacgtttcattcttgaccacctccaaaattggtctaaatttgataactatt
ttgatttctcgtgccgcattaatcaagcaagattcatcaagatctaatattctttcatct
cctgaaatctccacatggaatgaaatttatgataaactatttacttcattggaaagtaag
attcagctgatcttccctccaagagaatataatgatcacatcatgtacctacaaaatgac
aagtttatggatgaagcgtatatttggcagttcctagctagtttagcactaagtgggaaa
ttaaaccaccagagaatcattatcgatgaagtacgtgatgagatctttgccactattaac
gaggcagaaactttgcaaaaaaaagaaaaggagctgagtgtattacctcaaaggtctcaa
gaattagatgcagaattaaaatcgattatttataataaagagaaactataccaagatttg
aatttgttcctaaacgttatggggttggtgtaccgcgatggtgaaatttcagaactaaaa
taa
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