KEGG   Saccharomyces paradoxus: SPAR_D01520
Entry
SPAR_D01520       CDS       T08193                                 
Name
(RefSeq) Sub2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
spao  Saccharomyces paradoxus
Pathway
spao03013  Nucleocytoplasmic transport
spao03015  mRNA surveillance pathway
spao03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPAR_D01520
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPAR_D01520
   03015 mRNA surveillance pathway
    SPAR_D01520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_D01520
   03041 Spliceosome [BR:spao03041]
    SPAR_D01520
Enzymes [BR:spao01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SPAR_D01520
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     SPAR_D01520
Spliceosome [BR:spao03041]
 Complex C
  Other components
   EJC/TREX
    SPAR_D01520
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    SPAR_D01520
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 P-loop_SecA
Other DBs
NCBI-GeneID: 54629399
NCBI-ProteinID: XP_033765185
UniProt: A0A8B8UN25
LinkDB
Position
IV:<306380..>307720
AA seq 446 aa
MSHEGEEDLLEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIH
STGFKDFLLKPELSRAIIDCGFEHPSEVQQHTIPQSIHGTDVLCQAKSGLGKTAVFVLST
LQQLDPVPGEVAVVVICNARELAYQIRNEYLRFSKYMPDVKTAVFYGGTPISKDAELLKN
RDTAPHIVVATPGRLKALVREKYIDLSHVKNFVIDECDKVLEELDMRRDVQEIFRATPRD
KQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQYYIKLEEREKNRKLAQL
LDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRIC
VSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLA
KIQERFDVKIAEFPEEGIDPSTYLNN
NT seq 1341 nt   +upstreamnt  +downstreamnt
atgtcacacgaaggtgaagaagatttattggagtattccgataacgaacaagaaattcaa
attgatgcttctaaggctgctgaagccggagaaactggtgccgccacttctgccactgaa
ggtgataataataacaacactgcagctggcgacaagaaaggttcttatgttggtatccat
tccaccggtttcaaagatttcttgctgaagccagaactatcaagagccatcattgactgt
ggttttgaacatccttctgaggtccaacaacacaccattcctcagtctatccatggtacc
gatgtgttgtgtcaagctaagtcaggtttaggtaagacagctgtctttgttttatccact
ctgcaacagctggaccctgttcctggtgaagtcgccgttgttgtcatttgtaacgctaga
gaactagcctaccaaattcgtaacgagtatttgagattttccaaatatatgccagacgta
aaaacagccgtcttttacggtggtactccaatttctaaggatgctgaacttttaaagaat
agagacactgctccccacattgttgttgccactccaggtcgtttaaaggcgttagtgaga
gaaaaatacattgatttgtctcacgtcaagaactttgtcattgatgaatgtgataaagtt
ttggaagaattagacatgagaagagacgttcaagaaattttcagagctactccaagagac
aaacaagtcatgatgttttcagccacactttctcaagaaatcagaccaatttgtagacgt
ttcttacaaaatccattggaaatttttgtcgatgatgaagctaaacttactttacatggg
ttgcaacaatattatatcaaattagaagaacgtgaaaaaaaccgtaaattggctcaatta
ttagacgatttggaattcaatcaagtcattattttcgttaaatctactacaagagctaat
gagttgaccaaactgttaaacgcctctaacttcccagctattaccgttcatggtcacatg
aaacaagaagaacgtattgctcgttacaaggccttcaaagatttcgaaaaacgtatttgt
gtatccacagacgtttttggtagaggtatcgatattgaacgtattaacttagccattaat
tacgatttgaccaatgaagctgaccaatatttacatcgtgttggtagagccggtagattt
ggtactaagggtttggctatttcatttgtttcctcgaaggaagatgaggaagttctggct
aagatccaagaacgcttcgatgtcaaaatcgctgaattcccagaagaaggcattgatccg
tccacttatttgaataattaa

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