KEGG   Saccharomyces paradoxus: SPAR_D02420
Entry
SPAR_D02420       CDS       T08193                                 
Name
(RefSeq) Fal1
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
spao  Saccharomyces paradoxus
Pathway
spao03013  Nucleocytoplasmic transport
spao03015  mRNA surveillance pathway
spao03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    SPAR_D02420
  09122 Translation
   03013 Nucleocytoplasmic transport
    SPAR_D02420
   03015 mRNA surveillance pathway
    SPAR_D02420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:spao03019]
    SPAR_D02420
   03041 Spliceosome [BR:spao03041]
    SPAR_D02420
   03009 Ribosome biogenesis [BR:spao03009]
    SPAR_D02420
   03012 Translation factors [BR:spao03012]
    SPAR_D02420
Enzymes [BR:spao01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SPAR_D02420
Messenger RNA biogenesis [BR:spao03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     SPAR_D02420
   mRNA cycle factors
    Stress granule specific factors
     SPAR_D02420
Spliceosome [BR:spao03041]
 Complex C
  Other components
   EJC/TREX
    SPAR_D02420
Ribosome biogenesis [BR:spao03009]
 Eukaryotic type
  90S particles
   Helicases
    SPAR_D02420
Translation factors [BR:spao03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    SPAR_D02420
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 AAA_30 Helicase_RecD CMS1 TniB CobA_CobO_BtuR UvrD-helicase Cas3-like_C_2 DUF7784 Flavi_DEAD
Other DBs
NCBI-GeneID: 54629489
NCBI-ProteinID: XP_033765275
UniProt: A0A8B8UNB5
LinkDB
Position
IV:488278..489477
AA seq 399 aa
MSFNREEDQKLKFKTSKKLKVSSNFESMKLKDDLLRGIYSYGFEAPSSIQSRAITQIISG
KDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNLGDYMNV
NAFAMTGGKTLKDDLKKMQKHGCQVVSGTPGRVLDMIKRQMLQTRNVQMLVLDEADELLS
ETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIK
QYIVNVDKEDWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLLQSNFAVVSMHGDMK
QEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFG
RKGVAINFITKADSAKLREIEKFYSIKINLMPANFAELS
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgtcttttaacagagaagaagaccaaaaactgaagtttaaaacatcgaaaaaactaaag
gtgtcttcgaatttcgaaagcatgaagctgaaagatgatttacttcgaggaatatattca
tacggttttgaagcaccatcctctattcaatcgagagctattacacagattatctcagga
aaggatgttattgcacaagcacaatcaggtacaggtaaaacggcaacttttacaatcggc
cttttacaagctattgatttaaggaagaaagatttgcaagctctaatactatctcctacg
cgtgaattggcaagccaaattgggcaggtagtaaaaaatttgggtgattatatgaatgtc
aatgcatttgcaatgactggtggtaagaccctgaaagacgacctgaagaaaatgcaaaaa
catggctgccaggtcgttagcggaacaccaggaagggtattagacatgattaagagacaa
atgttgcaaacaagaaacgttcaaatgctagttttagatgaggctgatgagttattgagc
gagacgctaggtttcaaacaacagatatatgatatctttgctaaattgcctaaaaattgc
caagttgttgttgtaagcgcaacaatgaataaggacatcttggaagtaaccagaaaattt
atgaatgatcccgttaaaattctagtgaagcgggatgaaatatcgctcgaaggtatcaag
caatatatcgttaatgttgacaaagaagactggaagttcgatactctgtgtgatatatac
gattctttgactattacacaatgtgtgatattttgtaataccaagaaaaaagtagattgg
ttatcccagcggcttcttcaatccaattttgctgtagtctccatgcacggtgatatgaaa
caagaagaaagagataaagtaatgaatgatttcagaacaggccattcccgtgtactgata
tctacggatgtttgggcgcgcggtattgatgttcaacaagtttctttagtcattaactat
gatctgccagaaataatagaaaattacatccatcgtatcggtagaagtggtcgatttggt
agaaagggtgtggctataaacttcattaccaaagctgactcagcaaaactgagagaaatt
gaaaaattttattccatcaaaataaatctaatgccggcaaattttgcagaattgtcataa

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