KEGG   Saccharomyces paradoxus: SPAR_D02500
Entry
SPAR_D02500       CDS       T08193                                 
Name
(RefSeq) Rad28
  KO
K10570  DNA excision repair protein ERCC-8
Organism
spao  Saccharomyces paradoxus
Pathway
spao03420  Nucleotide excision repair
spao04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:spao00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    SPAR_D02500
  09124 Replication and repair
   03420 Nucleotide excision repair
    SPAR_D02500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:spao04121]
    SPAR_D02500
   03400 DNA repair and recombination proteins [BR:spao03400]
    SPAR_D02500
Ubiquitin system [BR:spao04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     SPAR_D02500
DNA repair and recombination proteins [BR:spao03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      SPAR_D02500
SSDB
Motif
Pfam: WD40 Beta-prop_RIG_2nd WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz EIF3I WDR55 Beta-prop_EML_2 Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_DCAF4 NBCH_WD40 Beta-prop_WDR11_1st Hira
Other DBs
NCBI-GeneID: 54629497
NCBI-ProteinID: XP_033765283
UniProt: A0A8B8UNE3
LinkDB
Position
IV:complement(503890..505410)
AA seq 506 aa
MDPFLQYRLGNISLNEFHRRAIQSELERILEDPLPNMKNYRFSKQSSYNLKKGTPLNIGV
NCLDIDNTGQVLLGGGDDGSLSIWGLEESLHHNDGGEQELINKRLNYIKRQPHQSDDEPA
QVAGYKNKKSRTNDSNAMRLVHSFQTQRNKYRMYRQSNGAVSIPRSHISNKTNSPTGRGE
QLSETDPEASISHHKYGITTLRWYKADNGMFFTGSNDRTVKIWDTNRLEAVQDINLGYKI
NQIDNNVADDSSLLAVASEDYYPRLIDLRTMNSGITTLGMGNQTRMQSEILCCKFNPVRE
QIIACGDMEGGIKLWDLRMRNRLYLELKRNKNGLKTINNDDDEGQSDVYFSSNQSKAHLR
CCSDIVWNSEGSELCSIGMDGKLNIWRPFTEILQPKGMASYFQLGPQDLSRIKYKKRVSQ
RLLWFDKFLLCITDNGEIEIYNTEEEKLWNKLVYPMVNQVKKNLASHCQFSSMVVQTNMM
NSVGLKLFFGTNNNTVSDGGSIFECS
NT seq 1521 nt   +upstreamnt  +downstreamnt
atggatccatttttacaatataggttaggtaacatttcattaaatgaatttcatagaagg
gctattcaaagcgaactagagaggattcttgaagatcccttaccaaacatgaagaactac
cgatttagcaaacaatccagctataatctaaagaaaggcactccgttgaatataggcgtc
aattgtcttgacattgataatactggtcaagtattgttagggggcggagatgatggctct
ctttccatatggggtttagaagaatcattgcaccataatgatggaggtgaacaggaattg
atcaataaaagattaaactatatcaagcgacagcctcaccagtctgatgatgaacctgct
caagtggcgggttataagaataaaaaatcacgaacaaacgatagcaacgctatgagattg
gtgcacagttttcaaacacaaagaaataaatatcgaatgtatagacagtctaatggtgca
gtttcaattccaagatcgcacatatcaaataaaacaaattcccctaccgggcgtggtgag
cagctatccgaaaccgatccagaagcttccatatctcaccacaaatatggcataacaact
ttaagatggtacaaagcagataatggaatgtttttcactggatccaatgatagaactgtc
aaaatatgggacacaaacagacttgaagcagttcaagatataaacctggggtataaaata
aatcaaattgacaataacgttgccgacgacagttctttgcttgcggttgcaagtgaagat
tactacccgagattaatcgacctgagaaccatgaattcagggataaccacgctcggaatg
ggaaaccaaacacgaatgcaatctgaaattttatgctgcaaattcaaccccgtgagggag
cagattattgcatgtggtgacatggagggtggaataaaattatgggacttaagaatgaga
aacagattgtatttagaattgaagagaaataaaaacgggctcaagactataaataacgat
gatgacgagggccaaagcgacgtttactttagttccaatcaatcaaaagctcatttaaga
tgttgtagtgacattgtttggaacagtgagggttcagaactatgctcaattggcatggat
ggaaaattgaatatttggaggccttttacggaaattttgcaaccaaaaggtatggctagt
tatttccagttgggaccacaggacctgagccgtatcaaatacaaaaaaagagtttcccaa
aggctactttggtttgacaagtttttactgtgtattactgacaatggagaaatagaaata
tataatacggaagaagagaaactttggaacaagctcgtatacccaatggttaatcaagta
aaaaaaaacctggcgtcgcattgtcagtttagttcaatggtcgtgcaaacaaatatgatg
aattcggtgggcctcaaattattctttggaaccaacaacaacactgttagcgatggaggt
tccatctttgaatgttcataa

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