Saccharomyces paradoxus: SPAR_D04270
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Entry
SPAR_D04270 CDS
T08193
Name
(RefSeq) Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
spao
Saccharomyces paradoxus
Pathway
spao03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
spao00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SPAR_D04270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spao03021
]
SPAR_D04270
03019 Messenger RNA biogenesis [BR:
spao03019
]
SPAR_D04270
Transcription machinery [BR:
spao03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SPAR_D04270
Messenger RNA biogenesis [BR:
spao03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
SPAR_D04270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pfc11_Rna14-15-ID
Pcf11_C
Pfc11_Clp1_ID
CID
zf_PCFS4
zf_UBZ
Borrelia_REV
Motif
Other DBs
NCBI-GeneID:
54629674
NCBI-ProteinID:
XP_033765460
UniProt:
A0A8B8UNU9
LinkDB
All DBs
Position
IV:complement(<890539..>892440)
Genome browser
AA seq
633 aa
AA seq
DB search
MDHDTEVIIKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQK
LYAFYALDSICKNVGSPYTIYFSRNLFSLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGL
PLFEGSALEKIEQFLIKASALHQKNLQAMLPTPTVPLLLRDIDKLTCLTSERLKNQPNDE
KLKMKLLVLSQLKQELKREKLTLNALKQVQMQLRQVFSQDQQVLQERMKYHEFQQQQQQQ
QQQQQQQQQQQQQQQQQQQQYHENKDRTGSSPQNSNAAIPLFGNNSDTMNQQNSLSSSLF
GNISGVESFQEIEKKKSLNKINNLYASLMSEGLIYTPPKESIVTLYKKLNGHSSYSLDSH
EKQLTKNLPKISLLNDILSDCKAYFATVNIDVLNNPTLQLSEQTLLQENPIVQNNLIHLL
YRSKPNKCSVCGKRFGNSESEKLLQNEHLDWHFRINTRIKGSQNTANTGISSSNLNTTTT
RKNIQSRNWYLNDSQWADFKDDEIISTKHKSDYTDPHANRNIDRSAISNHVDDTDENSVD
NTSVSGRNNEVKIREKYVVVPETSQDMAFICPICKETVTGVYDEESGEWVWKNTIEVNGK
YFHSSCYHETSQNSTKSNEGKVGLDDLKKLVTK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggatcacgacacagaagttataatcaaggatttcaatagtattcttgaagagctgact
tttaattcgagacccatcattaccactctcacgaagttagcagaagaaaatatctcgtgc
gcccaatatttcgttgacgctattgagagtagaattgaaaaatgtatgccaaagcagaaa
ctatacgctttttatgccttggactccatttgtaagaatgtcggcagcccatatacaatc
tacttcagtaggaatttgtttagcttgtacaaaagaacatacttattagtggacaacact
acaaggacaaaactcatcaatatgttcaagctttggttaaatcctaatgacaccggcctg
cctctgttcgaaggatcagcactggaaaaaatcgaacagtttttaataaaggctagcgct
ctacaccagaaaaacctgcaagcaatgttgccgactccaactgttccccttctattaaga
gatattgataaattaacttgtctgactagtgaaaggctgaagaatcaaccaaacgatgaa
aagttgaaaatgaaactattggttttatcccaactgaaacaagaactgaaaagagaaaag
ttgactctcaatgccttgaaacaagttcaaatgcaactaaggcaggtcttctcacaggac
caacaagttttgcaggaaagaatgaagtatcacgaatttcagcagcagcagcagcagcaa
cagcaacaacaacagcaacaacaacaacaacaacaacaacagcagcagcagcagcagcag
tatcatgaaaataaggataggaccggttcttctcctcaaaactctaatgcagcaatccca
ttatttggcaataattctgatacaatgaaccaacagaattctttatcttcctctcttttt
ggcaatatttccggcgttgaatcctttcaagaaattgagaagaagaagtcactaaataaa
atcaataacctctatgcatctctgatgtctgaggggctcatatatactccgccaaaagaa
tccatcgtgacgctttataaaaaactaaatggacactcaagctactctctcgattcacac
gaaaaacagttgacgaagaacctgccaaagatatcgttattgaatgatatcctttccgac
tgcaaagcctattttgccacagttaacatcgacgttttgaataacccaaccctacagttg
tccgaacaaactcttcttcaagaaaatcccatcgttcagaataaccttattcacttattg
taccgatcaaagccaaataaatgtagcgtgtgtggtaagaggtttggcaactcagagagt
gagaaattactacaaaatgaacatttggactggcattttagaataaatacaagaatcaag
ggatctcaaaatacagcaaatacaggtataagcagctctaacttaaacactactacaaca
aggaaaaatattcaatcaagaaattggtatttgaatgattctcaatgggcagacttcaaa
gatgatgaaattatctccacaaagcataaaagcgattataccgatccacatgctaataga
aatatcgataggagtgccataagtaatcatgttgatgacactgatgaaaactctgtagat
aatacttcagtaagtggtagaaataatgaggtaaaaatacgggaaaaatatgttgttgta
ccagaaacttcacaagacatggctttcatatgtccaatttgtaaggaaaccgtaactggc
gtttatgatgaagaatctggtgaatgggtttggaaaaataccattgaagttaatggtaaa
tatttccactcttcctgttatcatgaaacttcgcaaaactcaactaaatctaatgaaggc
aaagttggtttggacgacttaaagaagctagtcactaaataa
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